View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3854_high_5 (Length: 268)
Name: NF3854_high_5
Description: NF3854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3854_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 9770240 - 9770006
Alignment:
| Q |
16 |
atcaagttatattaacttggcctattcttggtttacactaatgtcagtgtttgatgcttaagccaattcttgcgagtactaatcaaattgaatgccacat |
115 |
Q |
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| T |
9770240 |
atcaagttatattaacttggcctattcttggtttacactaatgcaagtgtctgatgcttaagccaattcttgtgtgtactaatcaaattgaatgccacat |
9770141 |
T |
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| Q |
116 |
atcaacaaagcttcaaaaaagtaacaacaataattataagcattacaaataccattcttcacattattcaaatctacaattccattaacagattatcaaa |
215 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9770140 |
atccacaaagcttcaaaagagtaacaacaataattataagcattacaaataccattcttcacattattcaaatctacaattccattaacagattatcaaa |
9770041 |
T |
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| Q |
216 |
attacaaccaaattccaaaataaaaccatctcaat |
250 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
9770040 |
attacaaccaaatttcaaaataaaaccatctcaat |
9770006 |
T |
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