View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3854_low_4 (Length: 419)
Name: NF3854_low_4
Description: NF3854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3854_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 25 - 403
Target Start/End: Original strand, 40960717 - 40961095
Alignment:
| Q |
25 |
ttggactccaggtcggtttgactcctgtggaattacccaagaatgagcccgatgaacaacaacacatgcaggtcactttttgctccactccaataatctt |
124 |
Q |
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| T |
40960717 |
ttggactccaggaaggtttgactgctgaggaattacccaagaatgagcccgatgaacaacaacacatgcaggtcactttttgctccactccaataatctt |
40960816 |
T |
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| Q |
125 |
atgttacctattaaattgtgtgaatattatcgactaactgttagcttttcttctgtgaaacagatgacagatgctagttgcaaactttgcacagagcgta |
224 |
Q |
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| T |
40960817 |
atgttacctattaaattgtgtgaatattatcgactaactgttagcttttcttctgtgaaacagatgacagatgctagttgcaaactttgcacagagcgta |
40960916 |
T |
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| Q |
225 |
aagtgggtgtaagggatattattcgcgcaggacttgctgaccgatatatggtttgcaccttaatgctttactgatatttaattaaaatttaaaaactcat |
324 |
Q |
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| T |
40960917 |
aagtgggtgtaagggatattattcgtgcaggacttgctgaccgatatatggtttgcaccttaatgctttactgatatttaattaaaatttaaaaactcat |
40961016 |
T |
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| Q |
325 |
ctaatgcacttttaatgacccgggttttgattgttgctctgcttgttcagctggaatgtatcgcctgtggtcattcttg |
403 |
Q |
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| T |
40961017 |
ctaatgcacttttaatgacccgggttttgattgttgctctgcttgttcagctggaatgtatcgcctgtggtcattcttg |
40961095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 39 - 303
Target Start/End: Original strand, 40947542 - 40947807
Alignment:
| Q |
39 |
ggtttgactcctgtggaattacccaagaatgagcccgatgaacaacaacacatgcaggtcactttttgctccactccaataatcttatgttacctattaa |
138 |
Q |
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| T |
40947542 |
ggtttgactgctgaggaaatatccaaggatgagcccgatgagccacaacacatgcaggtcactttttgctccatcccaacaattttatgttatctgttaa |
40947641 |
T |
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| Q |
139 |
attgtgtgaatattatcgactaactgttagcttttcttct-gtgaaacagatgacagatgctagttgcaaactttgcacagagcgtaaagtgggtgtaag |
237 |
Q |
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| T |
40947642 |
attgtgtgaatattatttactgaatgttggcttttctactggtgaaacagatgacagatgctcgctgcaaaatttgcgatgagcaaaaagttggcgtgag |
40947741 |
T |
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| Q |
238 |
ggatattattcgcgcaggacttgctgaccgatatatggtttgcaccttaatgctttactgatattt |
303 |
Q |
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| T |
40947742 |
ggatattatccgtgcaggatatgctgaccgatatatggtcagcgccttaatgctttactgatattt |
40947807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 40947852 - 40947898
Alignment:
| Q |
354 |
attgttgctctgcttgttcagctggaatgtatcgcctgtggtcattc |
400 |
Q |
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| T |
40947852 |
atttttgctctgcttgttcagctggaatgcatagcttgtggtcattc |
40947898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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