View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3854_low_5 (Length: 399)
Name: NF3854_low_5
Description: NF3854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3854_low_5 |
 | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 23036168 - 23036535
Alignment:
| Q |
14 |
ttcttccggaaccaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23036168 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
23036267 |
T |
|
| Q |
114 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctctt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23036268 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctctt |
23036367 |
T |
|
| Q |
214 |
ggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23036368 |
ggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagttcgttgatacaattctcttcgacccttcctt |
23036467 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttct |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23036468 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttct |
23036535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 23039039 - 23039406
Alignment:
| Q |
14 |
ttcttccggaaccaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| ||||| |||||||| |||||||| | ||||||||| |||||||||||||| || |||||||| |
|
|
| T |
23039039 |
ttcttccggcaccaaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtcca |
23039138 |
T |
|
| Q |
114 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctctt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||| |
|
|
| T |
23039139 |
gtaatttggatctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataaccatttatctcacatgtttgacgacattctctt |
23039238 |
T |
|
| Q |
214 |
ggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctt |
313 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||||| ||||| || || |||||||||| |
|
|
| T |
23039239 |
ggcagcaaaagaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcattgatgcaattttcatcaacccttcctt |
23039338 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttct |
381 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
23039339 |
tcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatcccttatcatttct |
23039406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 23145918 - 23146285
Alignment:
| Q |
14 |
ttcttccggaaccaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
113 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
23145918 |
ttcttccagcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctgtcgatgaatctctctggataaaacctctctggttcagtcca |
23146017 |
T |
|
| Q |
114 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctctt |
213 |
Q |
| |
|
||| |||||||||||||||| |||||||||||| | | |||||| ||||||| |||||||||||||||||||| ||||| ||||| ||| ||||| |
|
|
| T |
23146018 |
gtagtttggatctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgtgataaccatttatatcacattcttgactacattctctc |
23146117 |
T |
|
| Q |
214 |
ggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctt |
313 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||| | |||||||||||| ||| ||||||||||| |||||| ||||| ||||| || || |||||||||| |
|
|
| T |
23146118 |
ggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacccttcctt |
23146217 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttct |
381 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||| | |||||| |||| |
|
|
| T |
23146218 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcatgattcttggatcctttaccaattct |
23146285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 381
Target Start/End: Original strand, 23024280 - 23024637
Alignment:
| Q |
24 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
123 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| ||||||||| | || |||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
23024280 |
accaaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctctctggataaaacctctctggttcggtccagtaatttgga |
23024379 |
T |
|
| Q |
124 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
223 |
Q |
| |
|
||||||||||||||||||||||| | | | |||||| ||||| | || |||| |||||| | |||| ||||| |||| |||| ||||| |||| |||| |
|
|
| T |
23024380 |
tctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgtcataaccgtctatcttacatgattgagcacattctctcggtattaaaa |
23024479 |
T |
|
| Q |
224 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctttcattttgaa |
323 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
23024480 |
gtggtgccggagggtgtaacctcagggtttctttgacaattgatttcaaataattaagttcattgatacaattctcttcaacccttcctttcatattgaa |
23024579 |
T |
|
| Q |
324 |
aacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttct |
381 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23024580 |
aatctctcgcacctcagcttgtgctttcttcattattcttggattctttaccatttct |
23024637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 377
Target Start/End: Original strand, 23148756 - 23149119
Alignment:
| Q |
14 |
ttcttccggaaccaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
113 |
Q |
| |
|
||||||||| |||||||||||||||||| || ||||||||||| ||||||||| |||| || ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
23148756 |
ttcttccggcaccaaaaggaatgtactcgaagttactccctttatagtcaatatcgctttcaatgaatctctctggataaaacctctctggttcagtcca |
23148855 |
T |
|
| Q |
114 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctctt |
213 |
Q |
| |
|
||| |||| |||||||||||||||||||||||| ||| | || ||| ||||||| || ||||||||||||||||| |||| |||||| ||| ||||| |
|
|
| T |
23148856 |
gtagtttgaatctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgtgataaccatttatatcacacgcttgactacattctctc |
23148955 |
T |
|
| Q |
214 |
ggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctt |
313 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||| | |||||||||||| ||| ||||||||||| |||||| ||||| ||||| || || ||| |||||| |
|
|
| T |
23148956 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacctttcctt |
23149055 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccat |
377 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
23149056 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccat |
23149119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 24 - 381
Target Start/End: Original strand, 23140054 - 23140411
Alignment:
| Q |
24 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
123 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| | | | ||||||||||| ||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
23140054 |
accaaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttgga |
23140153 |
T |
|
| Q |
124 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
223 |
Q |
| |
|
||||| || |||||||| ||||| | |||||| |||||| |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
23140154 |
tctctcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgtgataaccatgtatctcacatgcttgaccacactctcttggtagcaaaa |
23140253 |
T |
|
| Q |
224 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctttcattttgaa |
323 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||| ||||||||||||| ||| | |||||| ||||| || || |||||||||||||||||||| |
|
|
| T |
23140254 |
gaggcaccggagtgtgtaacctcaaggtttctttgacgattgatttcaaataatggagctcgttgatgcaattttcatcaacccttcctttcattttgaa |
23140353 |
T |
|
| Q |
324 |
aacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttct |
381 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
23140354 |
aacctctctcacctcatcttgcactttcttcattattcttggatcccttatcatttct |
23140411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 14 - 361
Target Start/End: Original strand, 23032712 - 23033044
Alignment:
| Q |
14 |
ttcttccggaaccaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
113 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23032712 |
ttcttccggcaccaaagggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatc---------------tctctggttcagtcca |
23032796 |
T |
|
| Q |
114 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctctt |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| | | | |||||||| ||||| ||||||||||||||||||||| ||||||||||| | || |||||| |
|
|
| T |
23032797 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctctt |
23032896 |
T |
|
| Q |
214 |
ggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctt |
313 |
Q |
| |
|
||||||||||||||| || |||||| ||||| |||||||||||||||||||||||||||||| |||| | | ||| |||| || || ||| |||||| |
|
|
| T |
23032897 |
ggtagcaaaagaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgagatcggggatgtaattttcatcaacctttcctt |
23032996 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcattattc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23032997 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcattattc |
23033044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 24 - 381
Target Start/End: Original strand, 23017070 - 23017427
Alignment:
| Q |
24 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
123 |
Q |
| |
|
||||||||||||||| || || ||||||||||| ||||||||| || |||| ||||||||||| |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
23017070 |
accaaaaggaatgtattcgaagttactccctttatagtcaataccgttgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
23017169 |
T |
|
| Q |
124 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
223 |
Q |
| |
|
|||||||| |||||||||||||| ||| | |||||| |||||| |||||||||||||||| |||| ||||||||| | |||| |||||||||||||||| |
|
|
| T |
23017170 |
tctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
23017269 |
T |
|
| Q |
224 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctttcattttgaa |
323 |
Q |
| |
|
||||| || ||| ||||| || |||||||||||||| |||||||||| |||| |||||| || || || || || || |||| |||||||||||| | |
|
|
| T |
23017270 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcatttatgcatttttcatcaacccgtcctttcatttttat |
23017369 |
T |
|
| Q |
324 |
aacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttct |
381 |
Q |
| |
|
||| || ||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23017370 |
aacatccctcacttcatcttgtgctttcttcattattcttggattccttatcatttct |
23017427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 22946404 - 22946588
Alignment:
| Q |
16 |
cttccggaaccaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagt |
115 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| | |||||| | |||| || || || || ||||| || |||||||| | ||||| |||||||| | |
|
|
| T |
22946404 |
cttccggcaccaaatggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaatctttcaggataaaacttatctggatcagtccaat |
22946503 |
T |
|
| Q |
116 |
aatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttg |
200 |
Q |
| |
|
| |||||||| ||| |||||||||||||||| ||| | ||| |||| || || |||||||||||||||| ||| |||||||||| |
|
|
| T |
22946504 |
attttggatcccttccaattgcccaagcattgattatcaccctactattgattggtatgtgataaccatcaatctcacatgcttg |
22946588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 22971949 - 22972162
Alignment:
| Q |
14 |
ttcttccggaaccaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
113 |
Q |
| |
|
||||||| | |||||| ||||||||||||||||| | |||||| | |||| || || || || ||||| || |||||||| | ||||| |||||||| |
|
|
| T |
22971949 |
ttcttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcaggataaaacttatctggatcagtcca |
22972048 |
T |
|
| Q |
114 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctctt |
213 |
Q |
| |
|
|| |||||||| ||| |||||||||||||||| ||| | ||| |||| || || |||||||||||||||| ||| |||| ||||| ||||| | ||| |
|
|
| T |
22972049 |
atattttggatcccttccaattgcccaagcattgattatcaccctacttttgattggtatgtgataaccatcaatctcacaagcttgtccacacaccctt |
22972148 |
T |
|
| Q |
214 |
ggtagcaaaagagg |
227 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
22972149 |
ggtactaaaagagg |
22972162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 22831843 - 22832042
Alignment:
| Q |
24 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
123 |
Q |
| |
|
||||||||||||| ||||||||||| | || || ||||| | | || || |||||||| || ||||||||||| ||||| || ||| | ||||||| |
|
|
| T |
22831843 |
accaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtcccaatgatttgga |
22831942 |
T |
|
| Q |
124 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
223 |
Q |
| |
|
|||||| |||| ||||||||||| | | | || || || |||| |||||| | ||| ||||||||| ||||||||| |||| |||||||| ||||||| |
|
|
| T |
22831943 |
tctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctcttggaagcaaaa |
22832042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 22941502 - 22941367
Alignment:
| Q |
88 |
ggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccattta |
187 |
Q |
| |
|
||||||||||||||||| ||| ||| | ||||||||||||| |||| ||||||||||| | | | || || || |||| |||||| | ||| ||||||| |
|
|
| T |
22941502 |
ggataaaatctctctgggtcatcccaatgatttggatctcttccaatggcccaagcattcactatcactttgcttttaaaaggtatatcatacccattta |
22941403 |
T |
|
| Q |
188 |
tcacacatgcttgaacacactctcttggtagcaaaa |
223 |
Q |
| |
|
| |||||||||| |||| |||||||| ||||||| |
|
|
| T |
22941402 |
tttcacatgcttgtccacattctcttggaagcaaaa |
22941367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 22916816 - 22916741
Alignment:
| Q |
71 |
tgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatt |
146 |
Q |
| |
|
|||||||||| || || ||||||||||| ||||| ||| ||| | ||||||||||||| |||| ||||||||||| |
|
|
| T |
22916816 |
tgtcgatgaacctttcaggataaaatctttctggatcatcccaattatttggatctcttccaatggcccaagcatt |
22916741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 21779811 - 21780178
Alignment:
| Q |
14 |
ttcttccggaaccaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
113 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
21779811 |
ttcttccggcaccaaatggaatgtactcaaaattactccctttaaagtcaatatcgctatcgatgaatctctctggataaaacatctctggttcagtcca |
21779910 |
T |
|
| Q |
114 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctctt |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||| | |||||| ||||||| || ||||| ||||||||||| ||||||||||| ||| ||||| |
|
|
| T |
21779911 |
gtagtttggatctcttgcaattgcccaagcattgattatcaccttagtcttaatcggaatgtggtaaccatttatatcacatgcttgactacattctctc |
21780010 |
T |
|
| Q |
214 |
ggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctt |
313 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||| | |||||||||||| ||||||||||||||| |||||| ||||| ||||| || || |||||||||| |
|
|
| T |
21780011 |
ggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcattgatgcaattttcatcaacccttcctt |
21780110 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttct |
381 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21780111 |
tcattttgaaaacttctctcacttcatcttgtgctttcttcattattcttggatcccttaccatttct |
21780178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 6756 - 6389
Alignment:
| Q |
14 |
ttcttccggaaccaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
113 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |||||| |||||||||| |||||| |||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
6756 |
ttcttccagcaccaaaaggaatgtactcaaaattaccccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagtcca |
6657 |
T |
|
| Q |
114 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctctt |
213 |
Q |
| |
|
| | ||||||||||||||||||||||||||||| ||| | ||||||||| ||| ||||||| ||||||||||||| ||||||||| | |||| |||||| |
|
|
| T |
6656 |
gaagtttggatctcttgcaattgcccaagcattgattatcaccttactcctaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
6557 |
T |
|
| Q |
214 |
ggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctt |
313 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | || |||| || || ||| |||| | |
|
|
| T |
6556 |
ggtagcaaaagaggtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattgagtttgctaatgtaattttcatcaacctttccat |
6457 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttct |
381 |
Q |
| |
|
||| | | ||||| |||| ||||||||||||||||||| ||||||||||||| | ||||| ||||||| |
|
|
| T |
6456 |
tcaatgtaaaaacttctcgcacctcagcttgtgctttcatcattattcttggctcccttatcatttct |
6389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 12609903 - 12610245
Alignment:
| Q |
14 |
ttcttccggaaccaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
113 |
Q |
| |
|
||||||| | |||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
12609903 |
ttcttccagcaccaaagggaatgtactcaaaattattccctttgtagtcaatagagctaccgatgaatctctccggataaaacttctctggttcagtcca |
12610002 |
T |
|
| Q |
114 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctctt |
213 |
Q |
| |
|
||| |||||||||||| |||| ||||| ||||| | | | ||||| || || || ||||| |||| |||| ||| |||||||||| |||| |||||| |
|
|
| T |
12610003 |
gtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatacgatacccatcaatctcacatgcttgtccacattctctt |
12610102 |
T |
|
| Q |
214 |
ggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctt |
313 |
Q |
| |
|
|| || |||||||| |||||| |||||||| | ||| ||||| || ||||| || |||||| |||||| || |||||||| ||||| || |||||| |
|
|
| T |
12610103 |
ggaagtaaaagaggacctggaggatgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctt |
12610202 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcat |
356 |
Q |
| |
|
|||| ||||| | ||||| |||||| |||||||||||||||| |
|
|
| T |
12610203 |
tcatgttgaatatatctcttacctcatcttgtgctttcttcat |
12610245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 15885964 - 15885697
Alignment:
| Q |
14 |
ttcttccggaaccaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
113 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||| |||||||||| ||| | ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
15885964 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtcca |
15885865 |
T |
|
| Q |
114 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctctt |
213 |
Q |
| |
|
|| |||||||||||| |||| ||||| ||||| | | | ||||| || || | ||||| |||||||||| ||| |||||||||| |||| |||||| |
|
|
| T |
15885864 |
atactttggatctcttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgataaccatcaatctcacatgcttgttcacattctctt |
15885765 |
T |
|
| Q |
214 |
ggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgag |
281 |
Q |
| |
|
|| || |||||||| | ||||||||||||||| | ||| ||||| || ||||| ||||||||| |||| |
|
|
| T |
15885764 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgag |
15885697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 12636999 - 12637146
Alignment:
| Q |
14 |
ttcttccggaaccaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
113 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| | |||||||||||||||| ||| | ||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
12636999 |
ttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtcca |
12637098 |
T |
|
| Q |
114 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttact |
161 |
Q |
| |
|
||| ||||||||||| |||||| ||| ||||||| | | |||||||| |
|
|
| T |
12637099 |
gtactttggatctctaccaattgtccatgcatttactatcaccttact |
12637146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 62161 - 62283
Alignment:
| Q |
24 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
123 |
Q |
| |
|
|||||||||||||||||| |||||| |||| ||||||||||||| || | ||||||||||| |||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
62161 |
accaaaaggaatgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagtaccttgga |
62260 |
T |
|
| Q |
124 |
tctcttgcaattgcccaagcatt |
146 |
Q |
| |
|
|||||| | |||||||| ||||| |
|
|
| T |
62261 |
tctcttccgattgcccatgcatt |
62283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 5594222 - 5594023
Alignment:
| Q |
24 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
123 |
Q |
| |
|
||||||||||||| ||||||||||| | || || ||||| | | || || |||||||| || ||||||||||| ||||| || ||| | ||||||| |
|
|
| T |
5594222 |
accaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtcccaatgatttgga |
5594123 |
T |
|
| Q |
124 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
223 |
Q |
| |
|
|||||| |||| ||||||||||| | | | || || || |||| |||||| | ||| ||||||||| ||||||||| |||| |||||||| ||||||| |
|
|
| T |
5594122 |
tctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctcttggaagcaaaa |
5594023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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