View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3855_high_1 (Length: 451)
Name: NF3855_high_1
Description: NF3855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3855_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 527759 - 527564
Alignment:
| Q |
15 |
gaaaataagcatttcattaattaattaagttcataactaaaatttcatatatccattctatatatatagtatcagtgtttcaaattgggactatgatgca |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
527759 |
gaaaagaagcatttcattaattaattaagttcataactaaaatttcatatatctattctatatatataatatcagtgtttcaaattgggactatgatgca |
527660 |
T |
|
| Q |
115 |
atcataatattgcggttgcagcaatgtttgcaaccgcatcaggccgccattgaagtgcaatgtaaatcgcattaaaaattacattgtcgtgctgca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
527659 |
atcataatattgcggttgcagcaatgtttgcaactgcatcaggccgccattgaagtgcaatgtaaatcacagtaaaaattacattgtcgtgctgca |
527564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 229 - 433
Target Start/End: Complemental strand, 527568 - 527352
Alignment:
| Q |
229 |
ctgcattaggccgcagcagactatttagtcatcaaacaaattatttaatggattataatatttcatgctaataagaattaaatttaccccgcaatatgca |
328 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||| |
|
|
| T |
527568 |
ctgcattaggccgcaacagactatttagtcatcaaacaaattatttaatggattatagtatttgatgctaataaaaattaaatttacgccgcaatatgca |
527469 |
T |
|
| Q |
329 |
tggcaactgtgatgcctgc------------nnnnnnntacatgtagttagttggtcaaaattaccttgagtgaagtgcgcctgttctgaaaccaaaact |
416 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
527468 |
tggcaacggtgatgcctgcaacaacaacaaaaaaaaaatacatgtagttagttggtcaaagttaccttcagtgaagtgcgcctgttctgaaaccaaaact |
527369 |
T |
|
| Q |
417 |
tgatttgcgttgggtct |
433 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
527368 |
tgatttgcgttgggtct |
527352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 19601019 - 19601053
Alignment:
| Q |
120 |
aatattgcggttgcagcaatgtttgcaaccgcatc |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
19601019 |
aatattgcggttgcagcaatgtttgcaaccgcatc |
19601053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University