View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3855_high_3 (Length: 416)
Name: NF3855_high_3
Description: NF3855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3855_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 57 - 400
Target Start/End: Original strand, 47661693 - 47662027
Alignment:
| Q |
57 |
ctatagggacaatatgttttttacttgtttataactttgatttatttatattattaagttatttggattctaaatgcatgtgatggattgtcattccatg |
156 |
Q |
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| T |
47661693 |
ctatagggacaatatgttttttacttgtttataactttgatttatttatattattaagttatttggattctaaatgcatgtgatggattgtcattccatg |
47661792 |
T |
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| Q |
157 |
gatgatatgattttctgagtatagatataatctacatgagctgcaagagtccttctcatcaaacattcctctaatattctcctgatctccatggcaatcc |
256 |
Q |
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| T |
47661793 |
gatgatatgattttctgagtatagatataa---------gctgcaagagtccttctcatcaaacattcctctaatattctcctgatctccatggcaatcc |
47661883 |
T |
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| Q |
257 |
tcataatccaacactgcttttgctgccaaaacatgcttggatgggaaaaacatgacaaatttcacggcgaggttctagttatggtgtgcttttcaaccaa |
356 |
Q |
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| T |
47661884 |
tcataatccaacactgcttttgctgccaaaacatgcttggatgggaaaaacatgacaaatttcacggcgaggttctagttatggtgtgcttttcaaccaa |
47661983 |
T |
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| Q |
357 |
aatagattgaaaatgctaaggtacttactccttgaggtgaaaag |
400 |
Q |
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| T |
47661984 |
aatagattgaaaatgctaaggtacttactccttgaggtgaaaag |
47662027 |
T |
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