View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3855_high_5 (Length: 325)
Name: NF3855_high_5
Description: NF3855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3855_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 15293901 - 15293623
Alignment:
| Q |
7 |
tcgaagaatatgttggtacaacttaacattttaggttaaaagttacgaaataggactaactcgattaacaagagtaacgttaagggacctaaatataaca |
106 |
Q |
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| T |
15293901 |
tcgaagaagatgttggtacaacttaacattttaggttaaaagttacgaaataggattaactcgattaacaagagtaacgttaagggacttaaatataaca |
15293802 |
T |
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| Q |
107 |
acaatgaattaggtgaccaaaatgaaaacaaaaaataacttaaagggactaaatattcaatttaatcattatttatttattaaacaaaatgagtactcta |
206 |
Q |
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| T |
15293801 |
acaatgaattaggtgaccaaaatgaaaacaaaaaatatgtt-aagggactaaatattcaatttaatcactatttatttattaaacaaaatgagtactcta |
15293703 |
T |
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| Q |
207 |
tcaagatagcttcttaacacaaactttgtaactcatactaacttgtaacccaagtatgggttggaaggtctttgataagg |
286 |
Q |
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| T |
15293702 |
ttaagatagcttcttaacgcaaactttgtaactcatactaacttgtaacccaagtatgggttggaaggtccttgataagg |
15293623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 48207779 - 48207818
Alignment:
| Q |
113 |
aattaggtgaccaaaatgaaaacaaaaaataacttaaagg |
152 |
Q |
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| T |
48207779 |
aattaggagaccaaaatgaaaacaaaaaataagttaaagg |
48207818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 53809557 - 53809601
Alignment:
| Q |
115 |
ttaggtgaccaaaatgaaaacaaaaaataacttaaagggactaaat |
160 |
Q |
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| T |
53809557 |
ttaggggaccaaaatgaaaacaaaaaataagtt-aagggactaaat |
53809601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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