View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3855_low_1 (Length: 640)

Name: NF3855_low_1
Description: NF3855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3855_low_1
NF3855_low_1
[»] chr3 (28 HSPs)
chr3 (304-640)||(34898023-34898363)
chr3 (6-152)||(34897794-34897940)
chr3 (130-255)||(1995448-1995573)
chr3 (141-215)||(52859272-52859346)
chr3 (147-255)||(19830394-19830502)
chr3 (147-255)||(27033655-27033763)
chr3 (147-255)||(43719910-43720018)
chr3 (145-255)||(10474400-10474509)
chr3 (186-255)||(2229987-2230056)
chr3 (147-255)||(29586340-29586447)
chr3 (148-251)||(44637950-44638052)
chr3 (181-255)||(54911658-54911732)
chr3 (182-255)||(33632827-33632899)
chr3 (186-255)||(34373835-34373904)
chr3 (147-243)||(24754673-24754769)
chr3 (147-243)||(24763670-24763766)
chr3 (140-255)||(48084823-48084939)
chr3 (192-255)||(34373593-34373656)
chr3 (182-255)||(31523666-31523739)
chr3 (147-255)||(51982549-51982656)
chr3 (145-214)||(30235416-30235484)
chr3 (147-252)||(40851781-40851886)
chr3 (182-255)||(42613084-42613157)
chr3 (186-255)||(46167397-46167466)
chr3 (182-255)||(49679268-49679341)
chr3 (190-254)||(25285843-25285907)
chr3 (152-240)||(47750274-47750361)
chr3 (182-243)||(550814-550875)
[»] chr6 (23 HSPs)
chr6 (139-255)||(7215807-7215923)
chr6 (139-255)||(2800566-2800682)
chr6 (138-255)||(4804452-4804569)
chr6 (147-255)||(7162088-7162196)
chr6 (147-255)||(21159332-21159440)
chr6 (189-255)||(27826542-27826608)
chr6 (147-255)||(17828532-17828639)
chr6 (147-255)||(17944166-17944274)
chr6 (186-255)||(12412641-12412710)
chr6 (186-255)||(13089751-13089820)
chr6 (149-243)||(23936269-23936365)
chr6 (182-255)||(24484883-24484956)
chr6 (147-255)||(227526-227635)
chr6 (184-255)||(32254031-32254102)
chr6 (186-255)||(1249150-1249217)
chr6 (140-182)||(9952993-9953035)
chr6 (182-255)||(13888520-13888594)
chr6 (182-255)||(2142291-2142364)
chr6 (206-255)||(29698167-29698216)
chr6 (182-251)||(7545645-7545715)
chr6 (190-228)||(9954332-9954370)
chr6 (281-313)||(7215949-7215981)
chr6 (148-204)||(29229149-29229204)
[»] chr1 (26 HSPs)
chr1 (139-255)||(39426214-39426330)
chr1 (138-255)||(32887735-32887851)
chr1 (143-255)||(26860010-26860121)
chr1 (141-227)||(35534741-35534825)
chr1 (147-255)||(26372256-26372362)
chr1 (147-255)||(50294026-50294134)
chr1 (182-255)||(5047379-5047452)
chr1 (186-255)||(12151771-12151840)
chr1 (147-255)||(32618805-32618911)
chr1 (186-243)||(7840681-7840738)
chr1 (140-255)||(18976260-18976376)
chr1 (147-255)||(50484390-50484498)
chr1 (181-251)||(24977248-24977318)
chr1 (182-255)||(30077642-30077715)
chr1 (136-255)||(5854799-5854917)
chr1 (193-255)||(24413291-24413353)
chr1 (186-255)||(48327156-48327224)
chr1 (182-255)||(52280037-52280110)
chr1 (148-202)||(49384627-49384680)
chr1 (198-255)||(12380924-12380981)
chr1 (198-255)||(12384991-12385048)
chr1 (140-204)||(1228496-1228560)
chr1 (138-214)||(12380831-12380907)
chr1 (138-214)||(12384898-12384974)
chr1 (139-239)||(27982072-27982171)
chr1 (147-223)||(45978041-45978117)
[»] chr2 (29 HSPs)
chr2 (141-254)||(30709115-30709228)
chr2 (140-255)||(4446852-4446967)
chr2 (138-255)||(19908784-19908899)
chr2 (140-215)||(30217517-30217592)
chr2 (139-255)||(31618724-31618838)
chr2 (147-255)||(13238685-13238793)
chr2 (147-255)||(35316829-35316937)
chr2 (164-255)||(15709772-15709862)
chr2 (190-255)||(28564896-28564961)
chr2 (143-255)||(30857638-30857749)
chr2 (139-209)||(30721564-30721632)
chr2 (164-255)||(36929720-36929810)
chr2 (140-253)||(2063359-2063472)
chr2 (182-255)||(8988859-8988932)
chr2 (181-254)||(34512022-34512095)
chr2 (182-255)||(35315286-35315359)
chr2 (182-255)||(38397085-38397158)
chr2 (183-255)||(21454494-21454565)
chr2 (182-255)||(374997-375070)
chr2 (186-255)||(23259489-23259558)
chr2 (281-323)||(6946245-6946287)
chr2 (164-254)||(15722239-15722328)
chr2 (147-213)||(22061433-22061498)
chr2 (182-251)||(19905889-19905958)
chr2 (182-255)||(23459844-23459917)
chr2 (140-240)||(35315521-35315620)
chr2 (189-255)||(4603114-4603180)
chr2 (141-190)||(6946335-6946384)
chr2 (147-255)||(36758825-36758932)
[»] chr8 (24 HSPs)
chr8 (141-255)||(42761717-42761831)
chr8 (138-255)||(21360280-21360400)
chr8 (186-255)||(30426671-30426740)
chr8 (147-255)||(28069723-28069831)
chr8 (147-255)||(36991360-36991468)
chr8 (164-255)||(18689495-18689585)
chr8 (164-255)||(24557162-24557252)
chr8 (182-255)||(26749546-26749619)
chr8 (145-255)||(42338008-42338117)
chr8 (147-255)||(6014198-6014307)
chr8 (184-255)||(36748492-36748562)
chr8 (191-255)||(10672519-10672583)
chr8 (182-238)||(17520403-17520459)
chr8 (138-255)||(10652571-10652688)
chr8 (186-251)||(40695249-40695314)
chr8 (183-255)||(34612568-34612640)
chr8 (140-255)||(45113274-45113390)
chr8 (137-228)||(37966397-37966487)
chr8 (136-202)||(20169125-20169190)
chr8 (190-255)||(24102020-24102085)
chr8 (206-255)||(28318924-28318973)
chr8 (186-255)||(41511266-41511335)
chr8 (206-255)||(44859189-44859238)
chr8 (182-254)||(3763520-3763592)
[»] chr5 (28 HSPs)
chr5 (147-255)||(29340999-29341106)
chr5 (147-255)||(35660572-35660680)
chr5 (148-255)||(4895699-4895806)
chr5 (147-255)||(11775797-11775905)
chr5 (147-255)||(18625384-18625492)
chr5 (147-255)||(32129580-32129688)
chr5 (147-255)||(37266735-37266843)
chr5 (147-254)||(43309113-43309220)
chr5 (186-255)||(14349807-14349876)
chr5 (182-255)||(31653039-31653112)
chr5 (186-255)||(40753164-40753233)
chr5 (147-255)||(13032122-13032230)
chr5 (164-255)||(34827196-34827287)
chr5 (149-255)||(39902419-39902525)
chr5 (182-255)||(10362012-10362085)
chr5 (182-255)||(36290606-36290679)
chr5 (183-255)||(2984389-2984461)
chr5 (145-211)||(9460597-9460662)
chr5 (182-252)||(27428879-27428949)
chr5 (182-255)||(3057152-3057225)
chr5 (190-251)||(14688582-14688643)
chr5 (182-235)||(18653385-18653438)
chr5 (183-255)||(31279918-31279990)
chr5 (192-255)||(43222130-43222193)
chr5 (201-255)||(4592804-4592858)
chr5 (140-174)||(21213953-21213987)
chr5 (182-255)||(31546490-31546563)
chr5 (182-255)||(41660110-41660183)
[»] chr7 (34 HSPs)
chr7 (147-255)||(4888471-4888579)
chr7 (140-229)||(47270580-47270668)
chr7 (186-255)||(25084730-25084799)
chr7 (142-255)||(40023215-40023327)
chr7 (147-255)||(9559017-9559125)
chr7 (140-255)||(39855770-39855884)
chr7 (186-255)||(12139330-12139400)
chr7 (182-255)||(32915960-32916033)
chr7 (139-255)||(33450510-33450627)
chr7 (182-255)||(47799898-47799971)
chr7 (147-255)||(7712331-7712438)
chr7 (178-234)||(29844316-29844372)
chr7 (148-255)||(989133-989239)
chr7 (140-254)||(7373872-7373985)
chr7 (151-255)||(7362572-7362676)
chr7 (147-255)||(16366522-16366630)
chr7 (147-255)||(21151156-21151264)
chr7 (138-255)||(47500236-47500354)
chr7 (182-255)||(8149613-8149686)
chr7 (186-255)||(45260429-45260498)
chr7 (148-255)||(29631052-29631156)
chr7 (147-239)||(44647984-44648076)
chr7 (184-255)||(24193597-24193668)
chr7 (138-255)||(18198260-18198377)
chr7 (182-255)||(30588539-30588612)
chr7 (147-215)||(5463867-5463934)
chr7 (181-251)||(19027680-19027751)
chr7 (181-251)||(20726885-20726956)
chr7 (152-255)||(38365659-38365761)
chr7 (184-243)||(46802331-46802390)
chr7 (136-202)||(44390835-44390900)
chr7 (169-226)||(18064588-18064643)
chr7 (147-255)||(47226039-47226145)
chr7 (281-313)||(47270512-47270544)
[»] chr4 (37 HSPs)
chr4 (147-255)||(19901881-19901989)
chr4 (147-252)||(23610649-23610754)
chr4 (147-255)||(5416429-5416536)
chr4 (142-243)||(36532641-36532741)
chr4 (138-255)||(56558283-56558400)
chr4 (143-255)||(1871281-1871392)
chr4 (140-255)||(56453777-56453891)
chr4 (139-210)||(15178628-15178699)
chr4 (181-255)||(5763159-5763233)
chr4 (182-255)||(56269074-56269147)
chr4 (147-255)||(3952133-3952241)
chr4 (147-255)||(34778425-34778533)
chr4 (148-234)||(5815267-5815350)
chr4 (144-255)||(42844148-42844258)
chr4 (182-255)||(23474115-23474188)
chr4 (186-255)||(24073620-24073689)
chr4 (182-255)||(48914516-48914589)
chr4 (147-255)||(18207003-18207111)
chr4 (182-255)||(5524451-5524524)
chr4 (145-255)||(13493276-13493387)
chr4 (190-255)||(30567905-30567970)
chr4 (145-210)||(33841766-33841830)
chr4 (182-255)||(36688186-36688259)
chr4 (142-242)||(47922324-47922425)
chr4 (182-255)||(50483554-50483627)
chr4 (147-255)||(33247093-33247201)
chr4 (147-255)||(39862521-39862629)
chr4 (189-255)||(33262557-33262623)
chr4 (182-255)||(1015852-1015925)
chr4 (147-255)||(12312438-12312547)
chr4 (219-255)||(46804635-46804671)
chr4 (217-255)||(12241441-12241479)
chr4 (189-255)||(38079725-38079791)
chr4 (181-218)||(5817976-5818013)
chr4 (153-238)||(36003216-36003300)
chr4 (182-255)||(37002249-37002322)
chr4 (182-255)||(42010121-42010194)
[»] scaffold0062 (2 HSPs)
scaffold0062 (164-255)||(58684-58774)
scaffold0062 (164-254)||(70796-70885)
[»] scaffold0250 (1 HSPs)
scaffold0250 (186-255)||(7151-7220)
[»] scaffold0121 (1 HSPs)
scaffold0121 (182-255)||(29567-29640)
[»] scaffold0012 (1 HSPs)
scaffold0012 (147-255)||(208067-208175)
[»] scaffold0035 (1 HSPs)
scaffold0035 (186-255)||(16399-16468)
[»] scaffold0008 (1 HSPs)
scaffold0008 (186-255)||(9203-9272)
[»] scaffold0171 (1 HSPs)
scaffold0171 (189-255)||(17311-17377)
[»] scaffold0126 (1 HSPs)
scaffold0126 (192-255)||(22450-22513)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-163; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 304 - 640
Target Start/End: Original strand, 34898023 - 34898363
Alignment:
Q  304 aaaatggagaagatcttgactcgagtgggaggtattgagtgaatgaatgaacatatcttgattggtagtaacatgtcccttatatagacgtaagatgtat 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898023 aaaatggagaagatcttgactcgagtgggaggtattgagtgaatgaatgaacatatcttgattggtagtaacatgtcccttatatagacgtaagatgtat 34898122  T
Q  404 aatattgagtttgacgactcactggatcttacgttgtaaacgaaggaatatcatgcggattaagcatttgaccaagaacaaatatatttgatgtaaatga 503  Q
    | |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34898123 agtattgagtttgatgactcactgaatcttacgttgtaaacgaaggaatatcatgcggattgagcatttgaccaagaacaaatatatttgatgtaaatga 34898222  T
Q  504 gcccttttgcctattgtatgaatggtttacatatccatttgattg----tatgcttagataggtttggttgtattttggactgttgatttgtatttttct 599  Q
     ||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34898223 tcccttttgcctattgtatgaatggtttacatatccatttgattgtatatatgcttagataggtttggttgtattttggacggttgatttgtatttttct 34898322  T
Q  600 tagaaatttatagaaaaacaaaactatttacttcccaccat 640  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  34898323 tagaaatttaaagaaaaacaaaactatttacttcacaccat 34898363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 34897794 - 34897940
Alignment:
Q  6 tggacatcatcaataccgttttgttcggtagaactataattttgatacaaatagaaaatatcattgtaaaaactgttttgtttttggagaatttgttgga 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34897794 tggacatcttcaataccgttttgttcggtagaactataattttgatacaaatagaaaatatcattgtaaaaactgttttgtttttggagaatttgtcgga 34897893  T
Q  106 atccaagtcaacatgtaatagaggtgggtgagaggggttaggatcct 152  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  34897894 atccaagtcaacatgtaattgaggtgggtgagaggggttaggatcct 34897940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 130 - 255
Target Start/End: Complemental strand, 1995573 - 1995448
Alignment:
Q  130 tgggtgagaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccat 229  Q
    ||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| | ||||||||||||| |||||||||     
T  1995573 tgggtgacatgggttaggatcctcttcattttatcaaataaatggaagtacacaatttgaagagagatagacatagaaaatagataatgagtcctaccaa 1995474  T
Q  230 taagtgggtcccactatcattaatta 255  Q
    |||||| ||| ||| |||||||||||    
T  1995473 taagtgagtctcaccatcattaatta 1995448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 52859346 - 52859272
Alignment:
Q  141 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 215  Q
    ||||| |||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||    
T  52859346 ggttatgatcctctccatttgataaaataaatgaaaatacacaatttagagagagatagacacataaaatagata 52859272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 19830394 - 19830502
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| |||| |||| ||||||||| |||||||||  ||||||||||||||||||||||||||| ||    
T  19830394 gatcctctccatttggcaaaataaatggagttttgcaagttggggagaaatagacacaaaaaatagatggtgggtcctaccattaagtgggtcccaccat 19830493  T
Q  247 cattaatta 255  Q
    |||||||||    
T  19830494 cattaatta 19830502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 27033763 - 27033655
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||| ||| ||||||||||||||||||||  |   ||| |||||||||||||||||||  ||||||||  |||||||||||| ||||||| |||||| ||    
T  27033763 gatcatctccatttgataaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctaccactaagtggatcccaccat 27033664  T
Q  247 cattaatta 255  Q
    |||||||||    
T  27033663 cattaatta 27033655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 43719910 - 43720018
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||| | ||||||||||||  |   ||| ||||||||||||||||||| |||||| ||  |||||||||||| |||||||||||||| ||    
T  43719910 gatcctctccatttaacaaaataaatggagttttgcaagttggagagagatagacacaaaaaataaattgtgggtcctaccactaagtgggtcccaccat 43720009  T
Q  247 cattaatta 255  Q
    |||||||||    
T  43720010 cattaatta 43720018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 10474400 - 10474509
Alignment:
Q  145 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccact 244  Q
    ||||||||||  |||||| | |||||||||| |||  |||||| |||||| |||||||||||||||||||||||| |||||| |||||||| || ||||     
T  10474400 aggatcctctctatttgacataataaatgga-gtatgcaattttgagagatatagacacataaaatagataatggatcctactattaagtgagttccacc 10474498  T
Q  245 atcattaatta 255  Q
    | |||||||||    
T  10474499 aacattaatta 10474509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 2230056 - 2229987
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||||| | |||| |||||||||||    
T  2230056 ttggagagagatagacacaaaaaatagatgatgggtcctaccactaagtggtttccaccatcattaatta 2229987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 29586447 - 29586340
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    ||||||||||||||   | |||||||||| |||  || ||||||||||||||||||||||||||||||| |  ||| ||| |||||||||||| ||| ||    
T  29586447 gatcctcttcatttagcataataaatgga-gtatgcagtttggagagagatagacacataaaatagatagtaagtcttactattaagtgggtctcaccat 29586349  T
Q  247 cattaatta 255  Q
    |||||||||    
T  29586348 cattaatta 29586340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 44638052 - 44637950
Alignment:
Q  148 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatc 247  Q
    |||||| |||||||| |||||||||||| |||  |||||| |||||||||| |||||||||||||||| |||  ||||| ||||||| ||||| ||| ||    
T  44638052 atcctcatcatttgacaaaataaatgga-gtatgcaattttgagagagataaacacataaaatagatagtggaccctactattaagtaggtcctactgtc 44637954  T
Q  248 atta 251  Q
    ||||    
T  44637953 atta 44637950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 54911732 - 54911658
Alignment:
Q  181 acaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||| ||||||||||| ||||||||||| || |||||||||||||||| || || |||| |||||||||||    
T  54911732 acaatttgaagagagatagagacataaaataggtagtgggtcctaccattaaatgagttccaccatcattaatta 54911658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 33632899 - 33632827
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | |||| |||||||||||    
T  33632899 caatttggagagagatagacacataaaatagatagtggatcctactattaaatggattccac-atcattaatta 33632827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 34373904 - 34373835
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||| |||||||||  |||||||||||| ||| | |||||||| |||||||||||    
T  34373904 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaattaggtcccaccatcattaatta 34373835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 24754769 - 24754673
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccac 243  Q
    |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||  |  ||||||||| ||||||||||||||    
T  24754769 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagatggtatgtcctaccactaagtgggtcccac 24754673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 24763766 - 24763670
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccac 243  Q
    |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||  |  ||||||||| ||||||||||||||    
T  24763766 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagatggtatgtcctaccactaagtgggtcccac 24763670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 140 - 255
Target Start/End: Complemental strand, 48084939 - 48084823
Alignment:
Q  140 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggt 238  Q
    |||||| |||||||| |||||| |||||||||| ||  |   |||||||| |||||||||||||| || |||||||  ||||||| |||| |||||||||    
T  48084939 gggttaagatcctctccatttgctaaaataaattgagttttgcaatttggggagagatagacacaaaagaatagatggtgggtccaaccactaagtgggt 48084840  T
Q  239 cccactatcattaatta 255  Q
    ||||  |||||||||||    
T  48084839 cccatcatcattaatta 48084823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 34373593 - 34373656
Alignment:
Q  192 agagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||  |||||||||  |||||||||||| |||||||||||||| |||||||||||    
T  34373593 agagatagacactaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaatta 34373656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 31523666 - 31523739
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||||| ||||||  |  |||||||||  | |||||||||||||| |||||||||||    
T  31523666 caatttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaatta 31523739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 51982549 - 51982656
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| |||||   |||||||||||||| |  ||||||||||||||||||| ||||||||||| || ||||| ||| ||||||||| || | |  ||    
T  51982549 gatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagatacataaaatagttagtgggttctatcattaagtgagttctatcat 51982647  T
Q  247 cattaatta 255  Q
    |||||||||    
T  51982648 cattaatta 51982656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 30235416 - 30235484
Alignment:
Q  145 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 214  Q
    |||||| |||||||||| |||||||||||| ||||  ||||||| ||||||||||||| | |||||||||    
T  30235416 aggatcatcttcatttgttaaaataaatgg-agtatgcaatttgaagagagatagacataaaaaatagat 30235484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 147 - 252
Target Start/End: Complemental strand, 40851886 - 40851781
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    ||||||||  |||||| ||||||||||||  |   ||| ||||||| ||||||||||| |||||||||  ||||| | |||| ||||||||||| || ||    
T  40851886 gatcctctcaatttgacaaaataaatggagttttgcaagttggagaaagatagacacaaaaaatagatggtgggttcaaccactaagtgggtcctaccat 40851787  T
Q  247 cattaa 252  Q
    ||||||    
T  40851786 cattaa 40851781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 42613157 - 42613084
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||| ||||||||||||| | ||||||  |  ||||||||| || |||||||||||||| |||||||||||    
T  42613157 caatttgaagagagatagacaaaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaatta 42613084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 46167466 - 46167397
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||| |||||| ||  |||||||||||| ||||||| ||| || || ||||||||    
T  46167466 ttggagagagatagacacaaaaaatatatggtgggtcctaccactaagtggatcctaccattattaatta 46167397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 49679268 - 49679341
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||||| ||||||  |   |||||||| || ||| |||||||||| |||||||||||    
T  49679268 caatttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaatta 49679341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 25285843 - 25285907
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatt 254  Q
    |||||||||||||||||||||||||| ||| ||||| |||||| || | ||||| ||||| ||||    
T  25285843 agagagatagacacataaaatagatagtggatcctatcattaaatgagacccaccatcatcaatt 25285907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 47750274 - 47750361
Alignment:
Q  152 tcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 240  Q
    ||||||||||| |||||||||| | ||| |||||||| ||||| ||| ||||| ||||||||||| | ||| || ||||||||| ||||    
T  47750274 tcttcatttgacaaaataaatg-aggtatacaatttgaagagacataaacacaaaaaatagataaagagtcttatcattaagtgagtcc 47750361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 550814 - 550875
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccac 243  Q
    ||||||||||| ||||| | ||| |||||||||  ||| ||||| |||||||||||||||||    
T  550814 caatttggagaaagatatatacaaaaaatagatggtggatcctatcattaagtgggtcccac 550875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 6e-45; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 139 - 255
Target Start/End: Original strand, 7215807 - 7215923
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  7215807 ggggttagtatcctctccatttgataaaataaatggaagtgcacaatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggt 7215906  T
Q  239 cccactatcattaatta 255  Q
    |||||||||||||||||    
T  7215907 cccactatcattaatta 7215923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 139 - 255
Target Start/End: Original strand, 2800566 - 2800682
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||    
T  2800566 ggggttaggatcctctccatttgataaaattaatggaaatacacaatttggagagagatagacacataaaatagatagtggatcataccattaagtgggt 2800665  T
Q  239 cccactatcattaatta 255  Q
    ||||| |||||| ||||    
T  2800666 cccaccatcattgatta 2800682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 4804569 - 4804452
Alignment:
Q  138 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 237  Q
    |||||| | |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||  |||||||||||| ||||||||    
T  4804569 aggggtgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtggg 4804470  T
Q  238 tcccactatcattaatta 255  Q
    |||||| |||||||||||    
T  4804469 tcccaccatcattaatta 4804452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 7162196 - 7162088
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||| ||| ||||||||||||||||||||  |   ||| |||||||||||||||||||  ||||||||  |||||||||| | |||||||||||||| ||    
T  7162196 gatcatctccatttgataaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctactactaagtgggtcccaccat 7162097  T
Q  247 cattaatta 255  Q
    |||||||||    
T  7162096 cattaatta 7162088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 21159332 - 21159440
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| |||||| ||||||||||| |  |   ||| ||||||||| ||||||||| |||||||||  |||||||||||| |||||||||||||| ||    
T  21159332 gatcctctccatttgttaaaataaatgaagttttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccat 21159431  T
Q  247 cattaatta 255  Q
    |||||||||    
T  21159432 cattaatta 21159440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 27826608 - 27826542
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||||||| |||||||||  |||||||||||| |||||||||||||| |||||||||||    
T  27826608 gagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaatta 27826542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 17828532 - 17828639
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| |||||| || ||||| |||| |||  |||||||||||||||||||||||||||||||||| ||| | |||| ||||||||| |||||  ||    
T  17828532 gatcctctacatttggtataataattgga-gtatgcaatttggagagagatagacacataaaatagatagtggattctactattaagtggatcccatcat 17828630  T
Q  247 cattaatta 255  Q
    || ||||||    
T  17828631 caataatta 17828639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 17944274 - 17944166
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||||||||||  ||||||||||||  |    || ||||||||||||||||||| |||||||||  | |||||||||| ||| |||||||||| ||    
T  17944274 gatcctcttcatttggcaaaataaatggagttttgtaagttggagagagatagacacaaaaaatagatggtaggtcctaccactaaatgggtcccaccat 17944175  T
Q  247 cattaatta 255  Q
    |||||||||    
T  17944174 cattaatta 17944166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 12412710 - 12412641
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||||||||||  ||||||||  |||||||||||| ||||||||| |||| |||||||||||    
T  12412710 ttggagagagatagacacaagaaatagatggtgggtcctaccactaagtgggttccaccatcattaatta 12412641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 13089751 - 13089820
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||| || ||||||  |||||||||||| |||||||| ||||| |||||||||||    
T  13089751 ttggagagagatagacacaaaatatagatggtgggtcctaccactaagtgggccccaccatcattaatta 13089820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 23936365 - 23936269
Alignment:
Q  149 tcctcttcatttgataaaataaatggaagtacacaatttggagagaga--tagacacataaaatagataatgggtcctaccattaagtgggtcccac 243  Q
    |||||| ||||||||||| | |||| |||||||||||| |||||||||  ||||||||||| || ||||  || | |||||||||||||||||||||    
T  23936365 tcctctccatttgataaattgaatgaaagtacacaattcggagagagagatagacacataagatggatagcggattctaccattaagtgggtcccac 23936269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 24484956 - 24484883
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||||| ||||||  |  ||||||||| || |||||||||||||| |||||||||||    
T  24484956 caatttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaatta 24484883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 227526 - 227635
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggtcccacta 245  Q
    |||||||| |||||| |||||||||||||  |   || |||||||||||||||||||| || |||||||  |||||||||||| ||||||| |||||  |    
T  227526 gatcctctccatttgctaaaataaatggagttttgcattttggagagagatagacacaaaagaatagatggtgggtcctaccactaagtggatcccatca 227625  T
Q  246 tcattaatta 255  Q
    ||||| ||||    
T  227626 tcattgatta 227635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 32254031 - 32254102
Alignment:
Q  184 atttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||| |||||||||| | |||| || |  ||||||||| ||||||||| |||||||||||||||||||    
T  32254031 atttggagggagatagacaaaaaaaaaaggtggtgggtcctatcattaagtgagtcccactatcattaatta 32254102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 1249150 - 1249217
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||| ||||| |  ||||||||  |||||||||||| |||||||||||||| |||||||||||    
T  1249150 ttggagagagacagacaaa--aaatagatggtgggtcctaccactaagtgggtcccaccatcattaatta 1249217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 9952993 - 9953035
Alignment:
Q  140 gggttaggatcctcttcatttgataaaataaatggaagtacac 182  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  9952993 gggttaagatcctctccatttgataaaataaatggaagtacac 9953035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 13888520 - 13888594
Alignment:
Q  182 caatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||| ||||| || |||||||  ||| |||||||||||| |||||||||  |||||||||||    
T  13888520 caatttggagagagatatacacaaaataatagatggtggttcctaccattaactgggtcccatcatcattaatta 13888594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 2142291 - 2142364
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||||| ||||||  |  ||||||| | ||||| |||||| |||| |||||||||||    
T  2142291 caatttggagagagatagacacaaaaaataagtggtgggtcccatcattaggtgggttccaccatcattaatta 2142364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 29698216 - 29698167
Alignment:
Q  206 aaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||  ||| ||||||||||||||||||||||| |||||||||||    
T  29698216 aaaatagatggtggatcctaccattaagtgggtcccaccatcattaatta 29698167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 7545715 - 7545645
Alignment:
Q  182 caatttggagagagatagacac-ataaaatagataatgggtcctaccattaagtgggtcccactatcatta 251  Q
    |||||||||||||||||||||| | ||||||  |  ||||||||| || ||||||| ||||||||||||||    
T  7545715 caatttggagagagatagacaccaaaaaataagtggtgggtcctatcactaagtggatcccactatcatta 7545645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 9954332 - 9954370
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctacca 228  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  9954332 agagagatagacacataaaatagatagtgggtcccacca 9954370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 7215949 - 7215981
Alignment:
Q  281 gagtctatatctctccaaatgaaaaaatggaga 313  Q
    ||||||||||||||||||||||| |||||||||    
T  7215949 gagtctatatctctccaaatgaagaaatggaga 7215981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 29229204 - 29229149
Alignment:
Q  148 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 204  Q
    ||||||| |||||| || |||||||||| |||  |||||||||||||||||||||||    
T  29229204 atcctctccatttggtataataaatgga-gtatgcaatttggagagagatagacaca 29229149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 6e-45; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 39426330 - 39426214
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  39426330 ggggttagtatcatctccatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggt 39426231  T
Q  239 cccactatcattaatta 255  Q
    |||||||||||||||||    
T  39426230 cccactatcattaatta 39426214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 138 - 255
Target Start/End: Original strand, 32887735 - 32887851
Alignment:
Q  138 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 237  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||| ||| ||| |||||||||||| ||||    
T  32887735 agggattaggatcctcttcatttgataaaataaatgga-gtacacagtttagagaaagatagacacataaaataaatagtggatcctaccattaaatggg 32887833  T
Q  238 tcccactatcattaatta 255  Q
    |||||| |||||||||||    
T  32887834 tcccaccatcattaatta 32887851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 143 - 255
Target Start/End: Original strand, 26860010 - 26860121
Alignment:
Q  143 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccca 242  Q
    |||||||| |||  ||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| | ||||||| || ||||||| |||||    
T  26860010 ttaggatcatctctatttgataaaataaatgga-gtacataatttgaagagagatagacacataaaatagatagtaggtcctatcactaagtggatccca 26860108  T
Q  243 ctatcattaatta 255  Q
    | |||||||||||    
T  26860109 caatcattaatta 26860121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 35534741 - 35534825
Alignment:
Q  141 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctacc 227  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||||    
T  35534741 ggttagtatcctctccatttgataaaataaatggaagtacacaattt--agagagatagacacataaaatagatagtggatcctacc 35534825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 26372362 - 26372256
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    ||||||||  ||||||||||||||||||||||| | |||||  |||||||||||||| ||||||||| ||| | ||||||||||||||||||||||| |     
T  26372362 gatcctctcaatttgataaaataaatggaagtagataattt--agagagatagacacgtaaaatagacaatagatcctaccattaagtgggtcccaccac 26372265  T
Q  247 cattaatta 255  Q
    |||||||||    
T  26372264 cattaatta 26372256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 50294026 - 50294134
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||||||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| ||||||| ||| || ||    
T  50294026 gatcctcttcatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtggatcctaccat 50294125  T
Q  247 cattaatta 255  Q
    |||||||||    
T  50294126 cattaatta 50294134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 5047379 - 5047452
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||||||| ||  ||||||||||||||||| |||||||| || ||||||||||| |||||||||||    
T  5047379 caatttggagagagattgatgcataaaatagataatggatcctaccactatgtgggtcccaccatcattaatta 5047452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 12151840 - 12151771
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||| ||||||| |||||||||  |||||||||||| |||||||||||||| |||||||||||    
T  12151840 ttggagagagaaagacacaaaaaatagattgtgggtcctaccactaagtgggtcccaccatcattaatta 12151771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 32618911 - 32618805
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||||||||||  | |||||||||| |||  |||||||||||||||| |||| ||||| |||||| ||| |||||| ||||||| |||||||| ||    
T  32618911 gatcctcttcatttggcataataaatgga-gtatccaatttggagagagatggacatataaa-tagatagtggatcctactattaagtaggtcccaccat 32618814  T
Q  247 cattaatta 255  Q
    |||||||||    
T  32618813 cattaatta 32618805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 7840681 - 7840738
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccac 243  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||| |||||||||    
T  7840681 ttggagagagatagacacaagaaatagatgatgggtcctaccattaagcgggtcccac 7840738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 18976260 - 18976376
Alignment:
Q  140 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggt 238  Q
    |||||| |||||||| |||||| |||||||||| ||  |   ||||||||||||||||||||||| || |||||||  ||| ||| |||||||||| |||    
T  18976260 gggttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtggatccaaccattaagtaggt 18976359  T
Q  239 cccactatcattaatta 255  Q
    ||||  |||||||||||    
T  18976360 cccatcatcattaatta 18976376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 50484498 - 50484390
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||||| | |||| ||||||||||||||  |    
T  50484498 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtacaaccactaagtgggtcccaccgt 50484399  T
Q  247 cattaatta 255  Q
    |||||||||    
T  50484398 cattaatta 50484390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 24977318 - 24977248
Alignment:
Q  181 acaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcatta 251  Q
    ||||||| |||||||||||||||| |||||||||  ||| |||||||| ||||||||| |||| |||||||    
T  24977318 acaatttagagagagatagacacaaaaaatagatggtggatcctaccactaagtgggttccacaatcatta 24977248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 30077642 - 30077715
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||||| ||||||  |  ||||| ||| || |||||| |||||||||||||||||||    
T  30077642 caatttggagagagatagacacaaaaaataagtggtgggttctatcactaagtgagtcccactatcattaatta 30077715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 136 - 255
Target Start/End: Original strand, 5854799 - 5854917
Alignment:
Q  136 agaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtg 235  Q
    |||||||||| |||||||| ||||||| | |||||||||| ||| |||||||| | ||||||||||| | ||| | || | ||| ||||||||| || ||    
T  5854799 agaggggttatgatcctctacatttgaaagaataaatgga-gtatacaatttgaaaagagatagacataaaaatttgagagtggatcctaccataaaatg 5854897  T
Q  236 ggtcccactatcattaatta 255  Q
    | |||||  |||||||||||    
T  5854898 gatcccatcatcattaatta 5854917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 24413291 - 24413353
Alignment:
Q  193 gagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||| ||||| |||  ||||||||| |||||| |||||||||| |||||||||||    
T  24413291 gagatagacacaaaaaatggatggtgggtcctatcattaaatgggtcccaccatcattaatta 24413353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 48327156 - 48327224
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||| | |||||||||  || ||||||||| ||||||||| |||| |||||||||||    
T  48327156 ttggagagagatagacaaaaaaaatagatggtgagtcctaccactaagtgggt-ccaccatcattaatta 48327224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 52280037 - 52280110
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||| | ||||||  |  ||||||||| || ||||||| |||||| |||||||||||    
T  52280037 caatttggagagagatagacataaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaatta 52280110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 49384627 - 49384680
Alignment:
Q  148 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 202  Q
    ||||||| |||||| |||||||||||||| || ||||||| ||||||||||||||    
T  49384627 atcctctccatttgttaaaataaatggaa-tatacaatttagagagagatagaca 49384680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 12380924 - 12380981
Alignment:
Q  198 agacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||| |||||||||  ||||| |||||| |||||| ||||||| |||||||||||    
T  12380924 agacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaatta 12380981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 12384991 - 12385048
Alignment:
Q  198 agacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||| |||||||||  ||||| |||||| |||||| ||||||| |||||||||||    
T  12384991 agacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaatta 12385048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 1228496 - 1228560
Alignment:
Q  140 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 204  Q
    |||||| ||||||||||||||  |||||||||||||  |   ||||||||||||||| |||||||    
T  1228496 gggttaagatcctcttcatttactaaaataaatggagttttgcaatttggagagagacagacaca 1228560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 12380831 - 12380907
Alignment:
Q  138 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 214  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  12380831 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12380907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 12384898 - 12384974
Alignment:
Q  138 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 214  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  12384898 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12384974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 27982171 - 27982072
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||| |||||||| |||||   |||||||||||||| |  ||||||||||||| ||||||| | |||||| ||  ||||||| | |||||| |||||    
T  27982171 ggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagatatagacataaaaaatatatgttgggtcccatcattaaatgggt 27982073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 45978117 - 45978041
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcc 223  Q
    ||||||||  |||||||||||||||||||  |   ||| ||||||||||||||| ||| |||||||||  |||||||    
T  45978117 gatcctctctatttgataaaataaatggagttttgcaagttggagagagatagatacaaaaaatagatggtgggtcc 45978041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 30709228 - 30709115
Alignment:
Q  141 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 240  Q
    |||||||||||||| ||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||    
T  30709228 ggttaggatcctctccatcttataaaatcaatgaaagtacacaatttggagagagatagacacataaaatagatattgggtcctaccactaagtggatcc 30709129  T
Q  241 cactatcattaatt 254  Q
    ||| ||||||||||    
T  30709128 caccatcattaatt 30709115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 4446852 - 4446967
Alignment:
Q  140 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 239  Q
    ||||||| ||||||| |||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||| ||| |||||||| ||| |||||     
T  4446852 gggttagtatcctctccatttgataaaataaatggaagtgtacaatttgaagagagatagacacataaaatagatagtggatcctaccactaattgggtt 4446951  T
Q  240 ccactatcattaatta 255  Q
     |||||||||||||||    
T  4446952 tcactatcattaatta 4446967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 19908899 - 19908784
Alignment:
Q  138 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 237  Q
    |||||| | |||||||||||||||||| |||||||||| |||  |||||||||| ||||||||||||||||||||||| || |||||||  |||||||||    
T  19908899 aggggtaaagatcctcttcatttgatataataaatgga-gtatgcaatttggag-gagatagacacataaaatagatagtgagtcctacttttaagtggg 19908802  T
Q  238 tcccactatcattaatta 255  Q
    |||||| |||||||||||    
T  19908801 tcccaccatcattaatta 19908784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 30217592 - 30217517
Alignment:
Q  140 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 215  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  30217592 gggttaggatcctctctatttgataaaataaatggaagcacacaatttagagtgagatagacacataaaatagata 30217517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 139 - 255
Target Start/End: Original strand, 31618724 - 31618838
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||| |||||||||||  ||||||| ||| |||||||||||| ||||||| | |||||||||||| || ||| || ||||||||| ||    
T  31618724 ggggttaggatcctctccatttgataaag-aaatgga-gtatacaatttggagaaagatagatatataaaatagatagtgagtcatatcattaagtgagt 31618821  T
Q  239 cccactatcattaatta 255  Q
    ||||| |||||||||||    
T  31618822 cccacaatcattaatta 31618838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 13238793 - 13238685
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||||||||||||  ||||||||||||| ||    
T  13238793 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccaccaagtgggtcccaccat 13238694  T
Q  247 cattaatta 255  Q
    |||||||||    
T  13238693 cattaatta 13238685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 35316937 - 35316829
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||| |||||||| |||||||||||||| ||    
T  35316937 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccat 35316838  T
Q  247 cattaatta 255  Q
    |||||||||    
T  35316837 cattaatta 35316829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 15709862 - 15709772
Alignment:
Q  164 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||| ||  ||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||| |||  |||||||||||    
T  15709862 aaaataaatggaa-tatgcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 15709772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 28564961 - 28564896
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||| |||||||||  |||||||||||| |||||||||||||| |||||||||||    
T  28564961 agagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaatta 28564896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 143 - 255
Target Start/End: Original strand, 30857638 - 30857749
Alignment:
Q  143 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccca 242  Q
    |||||||||||| ||||| | |||||||||||| |||   |||||| |||||| |||||||| |||||||||||||| |||||| ||||| ||| || ||    
T  30857638 ttaggatcctctccatttcacaaaataaatgga-gtatgtaatttgaagagaggtagacacaaaaaatagataatggatcctactattaaatggatcaca 30857736  T
Q  243 ctatcattaatta 255  Q
    | |||||||||||    
T  30857737 ccatcattaatta 30857749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 30721564 - 30721632
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaa 209  Q
    ||||||| ||||| || ||||||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  30721564 ggggttaagatccgctccatttgataaaataaatagaagtacacaatttg--gagagatagacacataaaa 30721632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 36929810 - 36929720
Alignment:
Q  164 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||| |||  ||||||||||||||||||||||||||||||| || || ||||||||||||| ||| | || | |||||||||||    
T  36929810 aaaataaatgga-gtatgcaatttggagagagatagacacataaaataggtagtgtgtcctaccattaaatggattccgccatcattaatta 36929720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 140 - 253
Target Start/End: Complemental strand, 2063472 - 2063359
Alignment:
Q  140 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat-aatgggtcctaccattaagtgggt 238  Q
    |||||| |||||||||||||||| ||||||||| || ||   ||||||||||||||||||||||| |||||||||   | ||||||||||  ||||||||    
T  2063472 gggttaagatcctcttcatttgacaaaataaataga-gtttgcaatttggagagagatagacacaaaaaatagatggtttggtcctaccaccaagtgggt 2063374  T
Q  239 cccactatcattaat 253  Q
     |||| |||||||||    
T  2063373 tccaccatcattaat 2063359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 8988932 - 8988859
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||||| ||||||  | || ||||||| || |||||||||||||| |||||||||||    
T  8988932 caatttggagagagatagacacaaaaaataagtgataggtcctatcactaagtgggtcccaccatcattaatta 8988859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 34512022 - 34512095
Alignment:
Q  181 acaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatt 254  Q
    |||||||||||| |||||||||||||||||||||| |||||  ||| ||||||| |||| ||| ||||||||||    
T  34512022 acaatttggagaaagatagacacataaaatagatagtgggttatactattaagtaggtctcacaatcattaatt 34512095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 35315286 - 35315359
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||| |||||||||||||||||||||||||||||| || ||| ||||| || ||||||| || ||||||||    
T  35315286 caatttgaagagagatagacacataaaatagataatggatcttactattaattgagtcccaccattattaatta 35315359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 38397158 - 38397085
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||| ||||||||||||| |||||||||||| ||||| |||| |||||||| ||||||| |||| ||||||    
T  38397158 caatttgaagagagatagacaaataaaatagatagtgggtgctactattaagtgagtcccaccatcaataatta 38397085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 21454494 - 21454565
Alignment:
Q  183 aatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||| |||||||||||||||| |||||||||  |||||| ||||||||||||||| |||| |||||||||||    
T  21454494 aatttagagagagatagacaca-aaaatagattgtgggtcataccattaagtgggttccaccatcattaatta 21454565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 375070 - 374997
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||||| ||||||  |  |||||||||  | |||||||||||||| |||||||||||    
T  375070 caatttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaatta 374997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 23259489 - 23259558
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||| ||||||| |  |||||||||| | ||||||| |||||| |||||||||||    
T  23259489 ttggagagagatagacacaaaaaatagctggtgggtcctactactaagtggatcccaccatcattaatta 23259558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 6946287 - 6946245
Alignment:
Q  281 gagtctatatctctccaaatgaaaaaatggagaagatcttgac 323  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  6946287 gagtctatatctctccaaattaaaaaatgaagaagatcttgac 6946245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 15722328 - 15722239
Alignment:
Q  164 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatt 254  Q
    ||||||||||||| ||  ||||||||| ||||||| ||| |||||||||||| |   |||||||||||| ||||| |||| ||||||||||    
T  15722328 aaaataaatggaa-tatgcaatttggaaagagataaacatataaaatagatagtttatcctaccattaaatgggttccaccatcattaatt 15722239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 22061433 - 22061498
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaataga 213  Q
    ||||||||  |||||| |||||||||| |||||  ||||||| ||||||||||||||||||||||||    
T  22061433 gatcctctcaatttgacaaaataaatg-aagtatgcaatttgaagagagatagacacataaaataga 22061498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 19905958 - 19905889
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcatta 251  Q
    |||||| ||||||||||||||||||||||||||  |||| | ||  |||||||| ||||||| |||||||    
T  19905958 caattttgagagagatagacacataaaatagatggtgggacatattattaagtgagtcccaccatcatta 19905889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 23459844 - 23459917
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||||| ||||||  |   |||||||| || ||| |||||||||| |||||||||||    
T  23459844 caatttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaatta 23459917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 35315620 - 35315521
Alignment:
Q  140 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 239  Q
    |||||| |||||||| |||||   |||||||||||||| |  ||||||||||||||||| ||||| | ||||| |  ||||||||| ||||||||| |||    
T  35315620 gggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagataaacacaaacaataggtggtgggtcctatcattaagtgagtc 35315522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 4603114 - 4603180
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||||| | | |||| |||||| || |||||||||  |||||||||| |||||||||||    
T  4603114 gagagagatagacatagacaatatataatgagttctaccattagatgggtcccaccatcattaatta 4603180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 6946384 - 6946335
Alignment:
Q  141 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttgga 190  Q
    |||||||||||||  |||||||||||||||||| || | |||||||||||    
T  6946384 ggttaggatcctccccatttgataaaataaatgaaaatgcacaatttgga 6946335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 36758825 - 36758932
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| |||||   |||||||||||||||   ||||||||||||||||||||||| ||| ||  |  ||| ||||| | ||| |||||| |||| ||    
T  36758825 gatcctctccatttataaaaataaatggaagttg-caatttggagagagatagacacaaaaagtaagtggtggatcctatctttaggtgggttccacaat 36758923  T
Q  247 cattaatta 255  Q
    |||||||||    
T  36758924 cattaatta 36758932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 8e-32; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 141 - 255
Target Start/End: Complemental strand, 42761831 - 42761717
Alignment:
Q  141 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 240  Q
    ||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||| | ||||||| |    
T  42761831 ggttaggatcctcttcacttaataaaataaatggaagtacgcaatttgaagagagatagacacataaaatagatagtggatcctaccactcagtgggttc 42761732  T
Q  241 cactatcattaatta 255  Q
    ||  |||||||||||    
T  42761731 catcatcattaatta 42761717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 21360400 - 21360280
Alignment:
Q  138 aggggttaggatcctcttcatttgataaaataaatggaag----tacacaatttggagagagatagacacataaaatagataatgggtcctaccattaag 233  Q
    ||||||||||||||||| ||||||||||||||||| ||||    |||| |||||||||||||||| |||||||| ||||||||| | || ||||||||||    
T  21360400 aggggttaggatcctctccatttgataaaataaat-gaagtacatacataatttggagagagataaacacataatatagataatagatcataccattaag 21360302  T
Q  234 tgggtcccactatcattaatta 255  Q
    |||  ||||| || ||||||||    
T  21360301 tggaccccaccattattaatta 21360280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 30426671 - 30426740
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||| |||||||||||    
T  30426671 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaatta 30426740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 28069831 - 28069723
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||| ||||||| |||||||||  |||||||||||| |||||||||||||| ||    
T  28069831 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccat 28069732  T
Q  247 cattaatta 255  Q
    |||||||||    
T  28069731 cattaatta 28069723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 36991468 - 36991360
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||| |  |||||||| ||||||||||||| |||||||||||||| ||    
T  36991468 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacataagaaatagatgatgggtcctaccactaagtgggtcccaccat 36991369  T
Q  247 cattaatta 255  Q
    |||||||||    
T  36991368 cattaatta 36991360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 18689585 - 18689495
Alignment:
Q  164 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||| ||  ||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||| |||  |||||||||||    
T  18689585 aaaataaatggaa-tatgcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 18689495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 24557162 - 24557252
Alignment:
Q  164 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||||| |  ||||||||| ||||||| | ||||||||||| |||||||||||||||||||||| ||||||  |||||||||||    
T  24557162 aaaataaatggaag-atgcaatttggaaagagatatagacataaaataggtaatgggtcctaccattaagtgagtcccatcatcattaatta 24557252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 26749546 - 26749619
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||||| ||||||  | |||||||||| || |||||||||||||| |||||||||||    
T  26749546 caatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaatta 26749619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 42338008 - 42338117
Alignment:
Q  145 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccact 244  Q
    ||||||||||||||||||||||||||||  ||||| | |||||||||||| ||| |||  ||||||||||| ||| |  ||| |||||||| ||||| |     
T  42338008 aggatcctcttcatttgataaaataaat-taagtatataatttggagagatatatacatgtaaaatagatagtggattgtactattaagtgtgtccctcc 42338106  T
Q  245 atcattaatta 255  Q
    |||||||||||    
T  42338107 atcattaatta 42338117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 6014307 - 6014198
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggtcccacta 245  Q
    |||||||| |||||| |||||||||| ||  |   ||||||||||| ||||||||||| || ||||||| || |||||||||||||||||| ||| | ||    
T  6014307 gatcctctccatttgctaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtggatcctatta 6014208  T
Q  246 tcattaatta 255  Q
    ||||||||||    
T  6014207 tcattaatta 6014198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 36748492 - 36748562
Alignment:
Q  184 atttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||| ||||||||||| |||||||| |  ||||||||||||||||||| |||||| |||||||||||    
T  36748492 atttggagatagatagacaca-aaaatagacagcgggtcctaccattaagtggatcccaccatcattaatta 36748562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 10672519 - 10672583
Alignment:
Q  191 gagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||||| |||||||||  ||| |||||||| |||||| ||||||| |||||||||||    
T  10672519 gagagatagacacaaaaaatagatggtggatcctaccactaagtgagtcccaccatcattaatta 10672583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 17520459 - 17520403
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||||||||| ||||||||||||||||||||  | ||||||| |||||||||||    
T  17520459 caatttggagagatatagacacataaaatagatagcgagtcctactattaagtgggt 17520403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 138 - 255
Target Start/End: Original strand, 10652571 - 10652688
Alignment:
Q  138 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 237  Q
    |||||| | |||||||| |||||| ||||||||||||   |   ||| ||||||||||||||| ||| ||||| |||  |||||| ||| | ||| ||||    
T  10652571 aggggtgaagatcctctccatttggtaaaataaatggtgttttgcaagttggagagagatagatacaaaaaattgatggtgggtcatactactaattggg 10652670  T
Q  238 tcccactatcattaatta 255  Q
    |||||| |||||||||||    
T  10652671 tcccaccatcattaatta 10652688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 40695249 - 40695314
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcatta 251  Q
    ||||||||||||||||||| |||||||||  | |||||||||| |||||| || |||| |||||||    
T  40695249 ttggagagagatagacacaaaaaatagatggtaggtcctaccactaagtgagttccaccatcatta 40695314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 34612640 - 34612568
Alignment:
Q  183 aatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||| |||||||||||||||| ||||||  |  ||||||||| || |||||||||| ||| |||||||||||    
T  34612640 aatttagagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtctcaccatcattaatta 34612568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 255
Target Start/End: Complemental strand, 45113390 - 45113274
Alignment:
Q  140 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggt 238  Q
    |||||| |||||||| |||||| |||||||||| |   |   ||||||||||||| ||||||||| || |||||||  ||||||| |||| |||||| ||    
T  45113390 gggttaagatcctctccatttgctaaaataaattgtgttttgcaatttggagagacatagacacaaaagaatagatggtgggtccaaccactaagtgtgt 45113291  T
Q  239 cccactatcattaatta 255  Q
    ||||  |||||||||||    
T  45113290 cccatcatcattaatta 45113274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 37966397 - 37966487
Alignment:
Q  137 gaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctacca 228  Q
    ||||||||| |||||||| ||||||  ||||||||||||| |   ||||||| ||||||||| ||||| |||||||||  | ||||||||||    
T  37966397 gaggggttaagatcctctccatttggcaaaataaatggaa-tttgcaatttgaagagagataaacacaaaaaatagattgtaggtcctacca 37966487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 20169190 - 20169125
Alignment:
Q  136 agaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 202  Q
    |||||||||| |||||||| |||||   |||||||||||||| |  |||||||||||||||||||||    
T  20169190 agaggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagaca 20169125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 24102085 - 24102020
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||| | |||||||||  ||| |||||||| |||||| || |||| |||||||||||    
T  24102085 agagagatagacataaaaaatagatggtggatcctaccactaagtgagttccaccatcattaatta 24102020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 28318924 - 28318973
Alignment:
Q  206 aaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||| ||||| |||||||||||| ||||||||||| || |||||||||||    
T  28318924 aaaaaagatagtgggtcctaccactaagtgggtccaaccatcattaatta 28318973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 41511335 - 41511266
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||| ||||||||| | | |||||||||| ||||||||| || ||||||| | |||| |||||||||||    
T  41511335 ttggaaagagatagatataaaaaatagatagtgggtcctatcactaagtggtttccaccatcattaatta 41511266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 44859189 - 44859238
Alignment:
Q  206 aaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||  ||||| |||||| |||||||||||||| |||||||||||    
T  44859189 aaaatagatggtgggttctaccactaagtgggtcccaccatcattaatta 44859238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 3763520 - 3763592
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatt 254  Q
    |||||||||||| | |||||| | |||| || |  |||||||||||||||||||||| ||||  |||||||||    
T  3763520 caatttggagagtggtagacaaaaaaaaaaggtggtgggtcctaccattaagtgggttccaccgtcattaatt 3763592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 29341106 - 29340999
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| |||||| || |||||||||| |||  ||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| ||    
T  29341106 gatcctctccatttggtataataaatgga-gtatgcaatttggagagagatagacacagaaaatagatagtgggtcctactattaagtgggtcccaccat 29341008  T
Q  247 cattaatta 255  Q
    |||||||||    
T  29341007 cattaatta 29340999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 35660572 - 35660680
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||| ||    
T  35660572 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccat 35660671  T
Q  247 cattaatta 255  Q
    |||||||||    
T  35660672 cattaatta 35660680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 148 - 255
Target Start/End: Original strand, 4895699 - 4895806
Alignment:
Q  148 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatc 247  Q
    |||||||| |||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||| |||    
T  4895699 atcctctttatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatc 4895798  T
Q  248 attaatta 255  Q
    ||||||||    
T  4895799 attaatta 4895806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 11775905 - 11775797
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| |||||| |||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||| |||||||| ||||||||||||||  |    
T  11775905 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccgt 11775806  T
Q  247 cattaatta 255  Q
    |||||||||    
T  11775805 cattaatta 11775797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 18625384 - 18625492
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||| ||||||| |||||||||  |||||||||||| |||||||||||||| ||    
T  18625384 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccat 18625483  T
Q  247 cattaatta 255  Q
    |||||||||    
T  18625484 cattaatta 18625492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 32129580 - 32129688
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |  | || ||||||||||||||||||  |||||||||  |||||||||||| |||||||||||||| ||    
T  32129580 gatcctctccatttggcaaaataaatggagttttataagttggagagagatagacaccaaaaatagatggtgggtcctaccactaagtgggtcccaccat 32129679  T
Q  247 cattaatta 255  Q
    |||||||||    
T  32129680 cattaatta 32129688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 37266843 - 37266735
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||| ||||| |||||||||||||| ||    
T  37266843 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtcccaccat 37266744  T
Q  247 cattaatta 255  Q
    |||||||||    
T  37266743 cattaatta 37266735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 147 - 254
Target Start/End: Complemental strand, 43309220 - 43309113
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    ||||||||| |||||||||||||||||||  |   ||| ||||||||||||||||| | |||||||||| ||| || ||||||||| ||||| |||| ||    
T  43309220 gatcctctttatttgataaaataaatggagttttgcaagttggagagagatagacataaaaaatagatagtggatcttaccattaaatgggttccaccat 43309121  T
Q  247 cattaatt 254  Q
    ||||||||    
T  43309120 cattaatt 43309113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 14349876 - 14349807
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||| ||||||| |||||||||  |||||||||||| |||||||||||||| |||||||||||    
T  14349876 ttggagagagacagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaatta 14349807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 31653112 - 31653039
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||| ||||||||||||||||  | ||||||| |||||||| ||| ||| |||||||||||    
T  31653112 caatttggagagagataaacacataaaatagatagcgagtcctactattaagtgagtctcacaatcattaatta 31653039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 40753164 - 40753233
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||| ||||||||||| |||||| ||  |||||||||||| |||||||||||||| |||||||||||    
T  40753164 ttggagaaagatagacacaaaaaatatatggtgggtcctaccactaagtgggtcccaccatcattaatta 40753233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 13032230 - 13032122
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| |||||||||||||||||||  ||||||||  || ||||||||| ||| |||||||||| ||    
T  13032230 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgagtcctaccactaaatgggtcccaccat 13032131  T
Q  247 cattaatta 255  Q
    |||||||||    
T  13032130 cattaatta 13032122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 34827287 - 34827196
Alignment:
Q  164 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||  ||  ||| ||||||||||||||||| | |||||||||  ||| |||||||| |||||||||||||| ||| |||||||    
T  34827287 aaaataaatggagttatgcaagttggagagagatagacaaaaaaaatagatggtggatcctaccactaagtgggtcccaccatctttaatta 34827196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 39902525 - 39902419
Alignment:
Q  149 tcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatca 248  Q
    |||||| ||||||| ||||||||||||  |  |||| ||||||||||||| |||||  ||||||||  |||||||||||| ||| ||| | |||| ||||    
T  39902525 tcctctccatttgacaaaataaatggagttttacaagttggagagagataaacacaagaaatagatggtgggtcctaccactaaatggattccaccatca 39902426  T
Q  249 ttaatta 255  Q
    |||||||    
T  39902425 ttaatta 39902419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 10362012 - 10362085
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||| ||||||||||||| ||||||||| | || ||| ||||||||||||||||||| |||  ||||||||||    
T  10362012 caattaggagagagatagagacataaaattggtagtggatcctaccattaagtgggtctcaccgtcattaatta 10362085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 36290679 - 36290606
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||||| ||||||  |  ||||||||| || ||||||| |||||| |||||||||||    
T  36290679 caatttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaatta 36290606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 2984389 - 2984461
Alignment:
Q  183 aatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||||||||||||||||||||  | |||  ||||| || ||| |||||||||| |||||||||||    
T  2984389 aatttggagagagatagacacataaaataagtgatgaatcctatcactaaatgggtcccaccatcattaatta 2984461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 9460597 - 9460662
Alignment:
Q  145 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaata 211  Q
    |||||||||| |||||| |||||||||| || |||  ||||||||||||||||||||||||| ||||    
T  9460597 aggatcctctccatttggtaaaataaataga-gtatgcaatttggagagagatagacacatataata 9460662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 27428879 - 27428949
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaa 252  Q
    ||||||||| ||||||||||||| |||||||||  ||  ||||||||||||||| || |||| ||||||||    
T  27428879 caatttggaaagagatagacacaaaaaatagatggtgaatcctaccattaagtgagttccaccatcattaa 27428949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 3057152 - 3057225
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||| ||||||| ||||| |||||||||  ||| ||||||||||||||| ||| ||  |||||||||||    
T  3057152 caatttggatagagataaacacaaaaaatagatggtggatcctaccattaagtgagtcacataatcattaatta 3057225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 14688643 - 14688582
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcatta 251  Q
    |||||||| ||||||||||||||||| ||| | |||||||||||||| | |||| |||||||    
T  14688643 agagagatcgacacataaaatagatattggattctaccattaagtggattccaccatcatta 14688582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 18653438 - 18653385
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtg 235  Q
    ||||||| ||||||||||||||| |||||||||| || || |||||||||||||    
T  18653438 caatttgaagagagatagacacaaaaaatagatagtgagttctaccattaagtg 18653385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 31279990 - 31279918
Alignment:
Q  183 aatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||| | ||||||||||||||| ||  ||||||||| ||||| |||||||| || || ||||||||    
T  31279990 aatttggagagtgctagacacataaaataaattgtgggtcctatcattatgtgggtcctaccataattaatta 31279918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 43222193 - 43222130
Alignment:
Q  192 agagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||| |||||||||  |||||| || |||||| ||| |||||| |||||||||||    
T  43222193 agagatagacacaaaaaatagatggtgggtcttatcattaaatggatcccaccatcattaatta 43222130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 4592858 - 4592804
Alignment:
Q  201 cacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||| |||||||||  |||||| ||||| |||||||||||||| |||||||||||    
T  4592858 cacaaaaaatagatggtgggtcttaccactaagtgggtcccaccatcattaatta 4592804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 174
Target Start/End: Complemental strand, 21213987 - 21213953
Alignment:
Q  140 gggttaggatcctcttcatttgataaaataaatgg 174  Q
    ||||||||||||||| |||||||||||||||||||    
T  21213987 gggttaggatcctctccatttgataaaataaatgg 21213953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 31546563 - 31546490
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||| |||||| |||||| |||||||||||  |||| ||||| ||||||||| |||||  || ||||||||    
T  31546563 caatttgaagagaggtagacatataaaatagatggtgggccctactattaagtggatcccatcataattaatta 31546490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 41660183 - 41660110
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||||| ||||||  |  ||||||  | || || ||||||||||| |||||||||||    
T  41660183 caatttggagagagatagacacaaaaaataagtggtgggtctcatcactaggtgggtcccaccatcattaatta 41660110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 4888579 - 4888471
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||| ||    
T  4888579 gatcctctccatttgacaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatagtgggtcctaccactaagtaggtcccaccat 4888480  T
Q  247 cattaatta 255  Q
    |||||||||    
T  4888479 cattaatta 4888471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 47270668 - 47270580
Alignment:
Q  140 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccat 229  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||| |||| |||||||||||| ||||||||||| || ||||||||    
T  47270668 gggttaggatcctctctatttgataaaataaatggaattacacaatttagagatagatagacacat-aaatagataataggccctaccat 47270580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 25084730 - 25084799
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||| |||||||||||    
T  25084730 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaatta 25084799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 142 - 255
Target Start/End: Original strand, 40023215 - 40023327
Alignment:
Q  142 gttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccc 241  Q
    ||||| |||||||  |||||| ||||||||  || ||| |||||||||||| ||||||||| ||||||||| |||||| || ||||||||||||||||||    
T  40023215 gttagaatcctctctatttgaaaaaataaaacga-gtatacaatttggagaaagatagacatataaaatagttaatggatcttaccattaagtgggtccc 40023313  T
Q  242 actatcattaatta 255  Q
    || | |||||||||    
T  40023314 accaccattaatta 40023327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 9559017 - 9559125
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||| ||| |||||||||  |||||||||||| |||||||||||||| ||    
T  9559017 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagatacaaaaaatagatggtgggtcctaccactaagtgggtcccaccat 9559116  T
Q  247 cattaatta 255  Q
    |||||||||    
T  9559117 cattaatta 9559125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 39855770 - 39855884
Alignment:
Q  140 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 239  Q
    |||||| ||| |||||||||||| ||| |||||||| ||    ||||||||||||||||||||||||||| ||||  | |||||||||| ||||||||||    
T  39855770 gggttaagattctcttcatttgacaaattaaatgga-gtttgtaatttggagagagatagacacataaaaaagatggtcggtcctaccactaagtgggtc 39855868  T
Q  240 ccactatcattaatta 255  Q
    |||  |||||||||||    
T  39855869 ccatcatcattaatta 39855884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 12139400 - 12139330
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagt-gggtcccactatcattaatta 255  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||||| ||||||||| |||||||||||    
T  12139400 ttggagagagatagacacaaaaaatagatggtgggtcctaccattaagtggggtcccaccatcattaatta 12139330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 32916033 - 32915960
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||| ||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||| ||||| |||||    
T  32916033 caatttgaagagagatagacacaaaaaataaatagtgggtcctaccattaagtgagtcccaccatcatgaatta 32915960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 33450627 - 33450510
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtggg 237  Q
    ||||||| |||||||| |||||| |||||||||| ||  |   ||||||||||||||||||||||| || |||||||  ||||||| |||| ||||||||    
T  33450627 ggggttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtggg 33450528  T
Q  238 tcccactatcattaatta 255  Q
    |||||  |||||||||||    
T  33450527 tcccatcatcattaatta 33450510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 47799898 - 47799971
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||||| ||||||  | |||||||||| || |||||||||||||| |||||||||||    
T  47799898 caatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaatta 47799971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 7712331 - 7712438
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| |||||   |||||||||||||| |  |||||| |||||||||||| |||||| ||||||| || ||||||||||||||||||| |||| ||    
T  7712331 gatcctctccatttataaaaataaatggaag-atgcaatttagagagagatagagacataagatagatagtgagtcctaccattaagtgggtgccaccat 7712429  T
Q  247 cattaatta 255  Q
    | |||||||    
T  7712430 ctttaatta 7712438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 29844372 - 29844316
Alignment:
Q  178 tacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagt 234  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||    
T  29844372 tacacaatttggagagagatagacacataaaatagatagtgggttctaccactaagt 29844316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 989239 - 989133
Alignment:
Q  148 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatc 247  Q
    ||||||| ||||||| ||| |||||||| ||   ||||||||||||||||||||||| |||||| ||| |||||||||||| ||||| ||||| || ||     
T  989239 atcctctccatttgacaaattaaatgga-gtttgcaatttggagagagatagacacaaaaaatatatagtgggtcctaccactaagtaggtccaaccata 989141  T
Q  248 attaatta 255  Q
    ||||||||    
T  989140 attaatta 989133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 7373985 - 7373872
Alignment:
Q  140 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 239  Q
    |||||| |||||||||| || | |||||||||||| | ||  ||||||||||||||||||  ||| |||||||| | |||||| ||| ||||||| | ||    
T  7373985 gggttaagatcctcttcgttggttaaaataaatggga-tatgcaatttggagagagataggtacaaaaaatagacagtgggtcttactattaagtagatc 7373887  T
Q  240 ccactatcattaatt 254  Q
    |||||||||||||||    
T  7373886 ccactatcattaatt 7373872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 7362676 - 7362572
Alignment:
Q  151 ctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcatt 250  Q
    |||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||| ||||| ||| ||||| |||| ||||||    
T  7362676 ctctccatttgacaaaataaatggagttttgcaaattggagagagatagacacaaaaaatagatggtgggtcgtaccactaaatgggttccaccatcatt 7362577  T
Q  251 aatta 255  Q
    |||||    
T  7362576 aatta 7362572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 16366630 - 16366522
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||| |  ||||||||  ||| |||||||| |||||| ||||||| ||    
T  16366630 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacataagaaatagatggtggatcctaccactaagtgtgtcccaccat 16366531  T
Q  247 cattaatta 255  Q
    |||||||||    
T  16366530 cattaatta 16366522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 21151264 - 21151156
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| |||||||||||||||||||  ||||||||   || |||||||| |||||||||||||| ||    
T  21151264 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggaggatcctaccactaagtgggtcccaccat 21151165  T
Q  247 cattaatta 255  Q
    |||||||||    
T  21151164 cattaatta 21151156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 255
Target Start/End: Original strand, 47500236 - 47500354
Alignment:
Q  138 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgg 236  Q
    |||||||| |||||||| |||||  |||||||||| ||  |    |||||||||||||||||||||| || |||||||  ||||||| |||| |||||||    
T  47500236 aggggttaagatcctctccatttactaaaataaattgagttttgtaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgg 47500335  T
Q  237 gtcccactatcattaatta 255  Q
    ||||||  |||||||||||    
T  47500336 gtcccatcatcattaatta 47500354  T

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Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 8149686 - 8149613
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||| ||||||||||| || |||||||  || |||||| || ||||||||||||||||| |||||||||||    
T  8149686 caatttgaagagagatagagacgtaaaataagtagtgggtcatatcattaagtgggtcccaccatcattaatta 8149613  T

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Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 45260429 - 45260498
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||| |||||||||  ||| |||||||| ||||||| |||||  |||||||||||    
T  45260429 ttggagagagatagacacaaaaaatagattgtggatcctaccactaagtggatcccatcatcattaatta 45260498  T

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Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 29631156 - 29631052
Alignment:
Q  148 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatc 247  Q
    ||||||| |||||| |||||||||||| |||   |||||||   ||||||||||||| || ||||||| ||||||| |||| || || ||||||||||||    
T  29631156 atcctctccatttggtaaaataaatgg-agtttgcaatttg--aagagatagacacaaaacatagatagtgggtccaaccactatgtaggtcccactatc 29631060  T
Q  248 attaatta 255  Q
    ||||||||    
T  29631059 attaatta 29631052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 44648076 - 44647984
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 239  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||| ||| |||| ||||||||||    
T  44648076 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatccgaccactaagtgggtc 44647984  T

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Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 24193668 - 24193597
Alignment:
Q  184 atttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||| |||||||||||||||||||||||| |||| ||| ||||||||| ||| |||||  |||| ||||||    
T  24193668 atttgaagagagatagacacataaaatagacaatgagtcttaccattaaatggatcccatcatcagtaatta 24193597  T

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Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 18198377 - 18198260
Alignment:
Q  138 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 237  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||| | ||||||||| |||||||||  ||||| || ||| |||||| |    
T  18198377 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaaattggagataaatagacacaaaaaatagatggtgggttctgccactaagtgag 18198278  T
Q  238 tcccactatcattaatta 255  Q
    |||||| |||||||||||    
T  18198277 tcccaccatcattaatta 18198260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 30588612 - 30588539
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||  ||||||||||||| ||||||  | | |||||||| || |||||||||||||| |||||||||||    
T  30588612 caatttgggaagagatagacacaaaaaataagtgacgggtcctatcactaagtgggtcccaccatcattaatta 30588539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 5463867 - 5463934
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 215  Q
    |||||||| ||||||||| |||||||  | ||| |||||||||||||| ||| ||||||||||||||||    
T  5463867 gatcctctccatttgatataataaatata-gtatacaatttggagagatataaacacataaaatagata 5463934  T

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Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 19027680 - 19027751
Alignment:
Q  181 acaatttggagagagatagacac-ataaaatagataatgggtcctaccattaagtgggtcccactatcatta 251  Q
    ||||||||||||||||||||||| | |||||| ||  ||||||||| || ||||||| |||||| |||||||    
T  19027680 acaatttggagagagatagacacaaaaaaataaatggtgggtcctatcactaagtggatcccaccatcatta 19027751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 20726956 - 20726885
Alignment:
Q  181 acaatttggagagagatagacac-ataaaatagataatgggtcctaccattaagtgggtcccactatcatta 251  Q
    ||||||||||||||||||||||| | |||||| ||  ||||||||| || ||||||| |||||| |||||||    
T  20726956 acaatttggagagagatagacacaaaaaaataaatggtgggtcctatcactaagtggatcccaccatcatta 20726885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 38365761 - 38365659
Alignment:
Q  152 tcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcatta 251  Q
    |||||||||  ||||||||||| || |||  |||||| || |||||||| ||| ||||| ||||||||||| ||| ||||| ||| | | ||||||||||    
T  38365761 tcttcattttttaaaataaatgtaa-tacgtaatttgaagtgagatagatacaaaaaattgataatgggtcttactattaaatggattctactatcatta 38365663  T
Q  252 atta 255  Q
    ||||    
T  38365662 atta 38365659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 46802331 - 46802390
Alignment:
Q  184 atttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccac 243  Q
    |||| |||||||||||||| | ||||||||   |||||||||||| ||||||||||||||    
T  46802331 atttagagagagatagacataaaaaatagacggtgggtcctaccactaagtgggtcccac 46802390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 44390900 - 44390835
Alignment:
Q  136 agaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 202  Q
    |||||||||| |||||||| |||||   |||||||||||||| |  |||||||||||||||||||||    
T  44390900 agaggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagaca 44390835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 18064643 - 18064588
Alignment:
Q  169 aaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctac 226  Q
    |||||||| ||||||||| |||||||||||||||||||||||||| | || |||||||    
T  18064643 aaatggaa-tacacaatt-ggagagagatagacacataaaatagacagtgagtcctac 18064588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 47226039 - 47226145
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||| ||||| ||||||  |  ||||||| |||| ||| |||||||||| ||    
T  47226039 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagataaacacaaaaaata--tggtgggtcccaccactaaatgggtcccaccat 47226136  T
Q  247 cattaatta 255  Q
    |||||||||    
T  47226137 cattaatta 47226145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 47270544 - 47270512
Alignment:
Q  281 gagtctatatctctccaaatgaaaaaatggaga 313  Q
    ||||||||||||||||||||||| |||||||||    
T  47270544 gagtctatatctctccaaatgaagaaatggaga 47270512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 19901881 - 19901989
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| |||||| |||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||| ||    
T  19901881 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccat 19901980  T
Q  247 cattaatta 255  Q
    |||||||||    
T  19901981 cattaatta 19901989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 147 - 252
Target Start/End: Complemental strand, 23610754 - 23610649
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||||||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||| ||||| |||||||||||||| ||    
T  23610754 gatcctctccatttgataaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtcccaccat 23610655  T
Q  247 cattaa 252  Q
    ||||||    
T  23610654 cattaa 23610649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 5416429 - 5416536
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||| ||    
T  5416429 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacaca-aaaatagattgtgggtcctaccactaagtgggtcccaccat 5416527  T
Q  247 cattaatta 255  Q
    |||||||||    
T  5416528 cattaatta 5416536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 36532741 - 36532641
Alignment:
Q  142 gttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccc 241  Q
    |||| |||||||| ||| |||||||||||||||| || |||||||| ||||||||||||||||||||||| ||| ||| ||||| |||| ||||||| ||    
T  36532741 gttaagatcctctccatctgataaaataaatgga-gttcacaatttagagagagatagacacataaaataaatagtggatcctatcattcagtgggttcc 36532643  T
Q  242 ac 243  Q
    ||    
T  36532642 ac 36532641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 56558400 - 56558283
Alignment:
Q  138 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 237  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||||||||| || ||||||||    
T  56558400 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctatcactaagtggg 56558301  T
Q  238 tcccactatcattaatta 255  Q
    |||||| |||||||||||    
T  56558300 tcccaccatcattaatta 56558283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 143 - 255
Target Start/End: Complemental strand, 1871392 - 1871281
Alignment:
Q  143 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccca 242  Q
    ||||||||||||  |||||| |||||||||||| |||  ||||||||||||||||||||| | || ||||||| ||| |||||| | |||||||||||||    
T  1871392 ttaggatcctctcaatttgacaaaataaatgga-gtatgcaatttggagagagatagacaaaaaatatagatagtggatcctactactaagtgggtccca 1871294  T
Q  243 ctatcattaatta 255  Q
      |||||||||||    
T  1871293 tcatcattaatta 1871281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 56453777 - 56453891
Alignment:
Q  140 gggttaggatcctcttcatttgata-aaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||| |||||||| ||||| ||| ||||||||||||| |  ||||||||||||||||||||||| ||||||| |  ||||||||| ||||||||||||    
T  56453777 gggttaagatcctctccattt-atagaaataaatggaag-atgcaatttggagagagatagacacaaaaaataggtggtgggtcctatcattaagtgggt 56453874  T
Q  239 cccactatcattaatta 255  Q
    ||||| |||||| ||||    
T  56453875 cccaccatcattcatta 56453891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 15178628 - 15178699
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaat 210  Q
    ||||||||||| |||| ||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||    
T  15178628 ggggttaggattctctccatttgataaaatgaatggaagtacataatttgaagagagataaacacataaaat 15178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 5763159 - 5763233
Alignment:
Q  181 acaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||| ||||||||||||||| ||| |||||||||  |||||||||||| |||||||||||||| |||||||||||    
T  5763159 acaagttggagagagatagaaacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaatta 5763233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 56269074 - 56269147
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||||| ||||||  |  |||||||||||| |||||||||||||| |||||||||||    
T  56269074 caatttggagagagatagacacaaaaaataagtggtgggtcctaccactaagtgggtcccaccatcattaatta 56269147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 3952133 - 3952241
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||| | |||||||||  |||||||||||| |||||||||| ||| ||    
T  3952133 gatcctctccatttggcaaaataaatggagtttggcaagttggagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtctcaccat 3952232  T
Q  247 cattaatta 255  Q
    |||||||||    
T  3952233 cattaatta 3952241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 34778533 - 34778425
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||| ||||||||||||||| |||||||||  ||| |||||||| |||||||||||||| ||    
T  34778533 gatcctctccatttggcaaaataaatggagttttgcaagttgaagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccat 34778434  T
Q  247 cattaatta 255  Q
    |||||||||    
T  34778433 cattaatta 34778425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 5815267 - 5815350
Alignment:
Q  148 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagt 234  Q
    ||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||  |||||| |||||||||| ||||| |||||    
T  5815267 atcctctccatttgataaaataaatgg-agtacaaaattttgagagagatagacac--aaaatatataatgggtcataccactaagt 5815350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 255
Target Start/End: Original strand, 42844148 - 42844258
Alignment:
Q  144 taggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccac 243  Q
    ||||||||||| ||| | ||||||||||| ||  || |||||||||||| |||||||||||||||||||| | || ||||||| ||||| ||| |||| |    
T  42844148 taggatcctctccatattataaaataaatagagtta-acaatttggagatagatagacacataaaatagagagtgtgtcctactattaaatggatccctc 42844246  T
Q  244 tatcattaatta 255  Q
     |||||||||||    
T  42844247 catcattaatta 42844258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 23474188 - 23474115
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||| ||||||||||||||||||||||||  |||||||||| ||| ||||  |||||| |||||||||||    
T  23474188 caatttggggagagatagacacataaaatagatggtgggtcctactattgagtgaatcccaccatcattaatta 23474115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 24073689 - 24073620
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||||||||||  ||||||||  |||||||||||| |||||||||||| | |||||||||||    
T  24073689 ttggagagagatagacacaacaaatagatggtgggtcctaccactaagtgggtcccgccatcattaatta 24073620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 48914516 - 48914589
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||| ||||||||| ||||||||||||||||  ||||||||| ||| |||||||| || |||||||||||||    
T  48914516 caatttagagagagatcgacacataaaatagattgtgggtcctatcataaagtgggttccgctatcattaatta 48914589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 18207003 - 18207111
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||| |||||||||| |  |   ||| || |||||||||||||| | |||||||||  |||||||||||| |||||||||||||  ||    
T  18207003 gatcctctccatttgacaaaataaatgtagttttgcaagttagagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtcccatcat 18207102  T
Q  247 cattaatta 255  Q
    |||||||||    
T  18207103 cattaatta 18207111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 5524524 - 5524451
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||| | ||||||  |  ||||||||| || |||||||||||||| |||||||||||    
T  5524524 caatttggagagagatagacataaaaaataagtggtgggtcctatcagtaagtgggtcccaccatcattaatta 5524451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 13493387 - 13493276
Alignment:
Q  145 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagaga--tagacacataaaatagataatgggtcctaccattaagtgggtccca 242  Q
    ||||||||||  |||||| |||||||||||| |||  |||||| ||||||||  ||||||| ||||||||||| ||| ||| |||| |||||| |||||     
T  13493387 aggatcctctctatttgacaaaataaatgga-gtatgcaatttagagagagagatagacacgtaaaatagatagtggatcccaccactaagtgagtccct 13493289  T
Q  243 ctatcattaatta 255  Q
     ||||||||||||    
T  13493288 ttatcattaatta 13493276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 30567970 - 30567905
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||| |||||||||  |||||||||||| ||||||||| |||  |||||||||||    
T  30567970 agagagatagacacaaaaaatagatggtgggtcctaccactaagtgggttccatcatcattaatta 30567905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 33841766 - 33841830
Alignment:
Q  145 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaat 210  Q
    |||||||||| |||||| |||| |||||||| ||| |||||||||||||||||||||||| |||||    
T  33841766 aggatcctctccatttgttaaagtaaatgga-gtatacaatttggagagagatagacacaaaaaat 33841830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 36688186 - 36688259
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||||||| ||||||  |  || |||||| || |||||||||||||| |||||||||||    
T  36688186 caatttggagagagatagacacaaaaaataagtgttgagtcctatcactaagtgggtcccaccatcattaatta 36688259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 47922324 - 47922425
Alignment:
Q  142 gttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggtcc 240  Q
    |||| |||||||| |||||| |||||||||| ||  |   ||||||||||||| ||||||||| || |||||||  |||||||||||| |||||||||||    
T  47922324 gttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagatatagacacaaaagaatagatggtgggtcctaccactaagtgggtcc 47922423  T
Q  241 ca 242  Q
    ||    
T  47922424 ca 47922425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 50483554 - 50483627
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||| |||||||||| ||||||||||| | | ||| ||||||||||| ||| || ||||||||||||    
T  50483554 caatttggagacagatagacacgtaaaatagatattcgatcccaccattaagtgagtcacattatcattaatta 50483627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 33247093 - 33247201
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| |||||||||||||||||||  ||||||||  ||||| |||||| ||| ||||| |||| ||    
T  33247093 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggttctaccactaaatgggttccaccat 33247192  T
Q  247 cattaatta 255  Q
    |||||||||    
T  33247193 cattaatta 33247201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 39862629 - 39862521
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||||||||||||| ||| |   ||| || |||||||||||||||| |||||||||  || |||||| || ||| || || |||| ||    
T  39862629 gatcctctccatttgataaaataaatagaattttgcaagtttgagagagatagacacaaaaaatagatggtgtgtcctatcactaaatgagttccaccat 39862530  T
Q  247 cattaatta 255  Q
    |||||||||    
T  39862529 cattaatta 39862521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 33262557 - 33262623
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||||||| |||||||||  ||| |||||||| ||| | |||||||| |||||||||||    
T  33262557 gagagagatagacacaaaaaatagatggtggatcctaccactaaataggtcccaccatcattaatta 33262623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 1015852 - 1015925
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||| |||||||||||||||| ||||||  |  ||||||| | ||||| ||||||||||| |||||||||||    
T  1015852 caatttagagagagatagacacaaaaaataagtggtgggtcccatcattaggtgggtcccaccatcattaatta 1015925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 12312438 - 12312547
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaa-tagataatgggtcctaccattaagtgggtcccacta 245  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||| | |||| |||||  ||| |||||||| |||||||||||||  |    
T  12312438 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacaaaaaaaaatagatggtggatcctaccactaagtgggtcccatca 12312537  T
Q  246 tcattaatta 255  Q
    ||||||||||    
T  12312538 tcattaatta 12312547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 46804671 - 46804635
Alignment:
Q  219 ggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||||||||||||| ||||||||||||||    
T  46804671 ggtcctaccattaagtgggtccaactatcattaatta 46804635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 12241441 - 12241479
Alignment:
Q  217 tgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  12241441 tgggtcctaccactaagtgggtcccaccatcattaatta 12241479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 38079725 - 38079791
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||  ||||||||  |||||||||| | ||||||| | |||| |||||||||||    
T  38079725 gagagagatagacacaagaaatagatggtgggtcctactactaagtggattccaccatcattaatta 38079791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 5818013 - 5817976
Alignment:
Q  181 acaatttggagagagatagacacataaaatagataatg 218  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  5818013 acaatttggagagagatagacacaaaaaagagataatg 5817976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 36003216 - 36003300
Alignment:
Q  153 cttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||  |||||||||| |||||  ||||||||||||||||| | ||| |||||| ||| |||||| |  ||||||||||||    
T  36003216 cttcatttgtcaaaataaatg-aagtatgcaatttggagagagataaatacaaaaaataaatattgggtcatgtcattaagtgggt 36003300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 37002249 - 37002322
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||| ||||||||||||| ||||||  |  ||| |||||  | |||||||||||||| |||||||||||    
T  37002249 caatttggaaagagatagacacaaaaaataagtggtggatcctattactaagtgggtcccaccatcattaatta 37002322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 42010194 - 42010121
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||| ||| ||||||  |   |||||||| || ||| |||||||||| |||||||||||    
T  42010194 caatttggagagagatagatacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaatta 42010121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 58774 - 58684
Alignment:
Q  164 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||| ||  ||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||| |||  |||||||||||    
T  58774 aaaataaatggaa-tatgcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 58684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 70885 - 70796
Alignment:
Q  164 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatt 254  Q
    ||||||||||||| ||  ||||||||| ||||||| ||| |||||||||||| |   |||||||||||| ||||| |||| ||||||||||    
T  70885 aaaataaatggaa-tatgcaatttggaaagagataaacatataaaatagatagtttatcctaccattaaatgggttccaccatcattaatt 70796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 7220 - 7151
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||| |||||||||  |||||||||| ||||||||||| |||| |||||||||||    
T  7220 ttggagagagatagacacaaaaaatagatggtgggtcctactattaagtgggttccaccatcattaatta 7151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 29567 - 29640
Alignment:
Q  182 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||| |||||||||||| ||||||||||| |||| ||||||| ||||| ||| |||||||||||||||||||    
T  29567 caatttagagagagatagagacataaaataggtaataggtcctagcattacgtgagtcccactatcattaatta 29640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 208175 - 208067
Alignment:
Q  147 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactat 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||| ||||| |||||||||  |||||||||||| |||||||||||||  ||    
T  208175 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagataaacacaaaaaatagatggtgggtcctaccactaagtgggtcccatcat 208076  T
Q  247 cattaatta 255  Q
    |||||||||    
T  208075 cattaatta 208067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 16399 - 16468
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||| |||||| ||  |||||||||||| |||||||||||||  |||||||||||    
T  16399 ttggagagagatagacacaaaaaataaatggtgggtcctaccactaagtgggtcccatcatcattaatta 16468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 9203 - 9272
Alignment:
Q  186 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||||||||| |||||||||  ||||||| |||| ||||||| | |||| |||||||||||    
T  9203 ttggagagagatagacacagaaaatagatggtgggtccaaccactaagtggattccaccatcattaatta 9272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 17311 - 17377
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    |||||||||||||||| ||||||  |  ||||||||| || |||||||||||||| |||||||||||    
T  17311 gagagagatagacacaaaaaataagtgctgggtcctatcactaagtgggtcccaccatcattaatta 17377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 22450 - 22513
Alignment:
Q  192 agagatagacacataaaatagataatgggtcctaccattaagtgggtcccactatcattaatta 255  Q
    ||||||||||||| |||||||||| ||| |||||||| |||||| || |||| || ||||||||    
T  22450 agagatagacacaaaaaatagatagtggatcctaccactaagtgagttccacaataattaatta 22513  T

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