View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3855_low_12 (Length: 228)
Name: NF3855_low_12
Description: NF3855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3855_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 4939297 - 4939504
Alignment:
| Q |
1 |
gtacttgtttttcattcaggttttagattatcaatcacataaacaaagcaaccctgtatgtgaacgaaattcaaaatttccacatgggtttgtgattagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4939297 |
gtacttgtttttcattcaggttttagattatcaatcacataaacaaagcaaccctgtatgtgaacgaaattcaaaatttccacatgggtttgtgattagg |
4939396 |
T |
|
| Q |
101 |
aacaaaagaaattaagtaagaaacaattatctttttaaattcattgaataattagatatatcatgtctaatattctagaacaaatatatcgattattcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4939397 |
aacaaaagaaattaagtaagaaacaattatctttttaaattcattgaataattatatatatcatgtctaatattctagaacaaatacatcgattattcaa |
4939496 |
T |
|
| Q |
201 |
tgaatcta |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
4939497 |
tgaatcta |
4939504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 6604450 - 6604413
Alignment:
| Q |
117 |
taagaaacaattatctttttaaattcattgaataatta |
154 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6604450 |
taagaaacaattgactttttaaattcattgaataatta |
6604413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 32902896 - 32902859
Alignment:
| Q |
117 |
taagaaacaattatctttttaaattcattgaataatta |
154 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
32902896 |
taagaaaaaattgtctttttaaattcattgaataatta |
32902859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 16412311 - 16412273
Alignment:
| Q |
170 |
atattctagaacaaatatatcgattattcaatgaatcta |
208 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
16412311 |
atattctagaccaaatatatcaattattcaatgaatcta |
16412273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 22210809 - 22210846
Alignment:
| Q |
117 |
taagaaacaattatctttttaaattcattgaataatta |
154 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22210809 |
taagaaacaattgactttttaaattcattgaataatta |
22210846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 9373522 - 9373485
Alignment:
| Q |
117 |
taagaaacaattatctttttaaattcattgaataatta |
154 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9373522 |
taagaaacaattgactttttaaattcattgaataatta |
9373485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 19512751 - 19512787
Alignment:
| Q |
117 |
taagaaacaattatctttttaaattcattgaataatt |
153 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19512751 |
taagaaacaattgactttttaaattcattgaataatt |
19512787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University