View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3855_low_5 (Length: 414)
Name: NF3855_low_5
Description: NF3855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3855_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 12 - 401
Target Start/End: Complemental strand, 31219927 - 31219539
Alignment:
| Q |
12 |
atgaatgattcgttgttcttctagggtgtattccaagatcgaaaggagaagaaagtggattcttctgtaaagagaatgctggagatgaaagagaaagaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31219927 |
atgaatgattcgttgttcttctagggtgtattccaagatcgaaaggagaagaaagtggattcttctgtaaagagaatgctggagatgaaagagaaagaat |
31219828 |
T |
|
| Q |
112 |
tatggttgcagttgcagcagaaactttttgacgagnnnnnnnngtattttgagcttgaaatggaacaaaagcggaaatccctcattaagaagtttaggag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31219827 |
tatggttgcagttgcagcagaaactttttgacgagaaaaaaatgtattttgagcttgaaatggaacaaaagcggaaatccctcattaagaagtttaggag |
31219728 |
T |
|
| Q |
212 |
acaggaggaagccttagagtatagggaagctgaagtcaaccttagggaaaccaaagttgttgaaaaagagcaagttgtgagtatgatctctgagagaata |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31219727 |
acaggaggaagccttagagtatagggaagctgaagtcaaccttagggaaaccaaggttgttgaaaaagagcaagttgtgaggatgatctctgagagaata |
31219628 |
T |
|
| Q |
312 |
aaggttccaaagcaaggcacttgtaaatatgttaaaatctttgaaggagatggaaatgactcaaaaaatgacgtctgagagaataaaggt |
401 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31219627 |
aaggttcaaaagcaaggcacttgt-aatatgttaaaatctttgaaggagatggaaatgactcaaaaaatgacgtctgagagaataaaggt |
31219539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 401
Target Start/End: Complemental strand, 31214172 - 31213784
Alignment:
| Q |
12 |
atgaatgattcgttgttcttctagggtgtattccaagatcgaaaggagaagaaagtggattcttctgtaaagagaatgctggagatgaaagagaaagaat |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31214172 |
atgaatgattcgttgttcttcttgggtgtattccaagatcgaaaggagaagaaagtggattcttctgtaaagagaatgctggagatgaaagagaaagaat |
31214073 |
T |
|
| Q |
112 |
tatggttgcagttgcagcagaaactttttgacgagnnnnnnnngtattttgagcttgaaatggaacaaaagcggaaatccctcattaagaagtttaggag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31214072 |
tatggttgcagttgcagcagaaactttttgacgagaaaaaaatgtattttgagcttgaaatggaacaaaagcggaaatccctcattaagaagtttaggag |
31213973 |
T |
|
| Q |
212 |
acaggaggaagccttagagtatagggaagctgaagtcaaccttagggaaaccaaagttgttgaaaaagagcaagttgtgagtatgatctctgagagaata |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31213972 |
acaggaggaagccttagagtatagggaagctgaagtcaaccttagggaaaccaaggttgttgaaaaagagcaagttgtgaggatgatctctgagagaata |
31213873 |
T |
|
| Q |
312 |
aaggttccaaagcaaggcacttgtaaatatgttaaaatctttgaaggagatggaaatgactcaaaaaatgacgtctgagagaataaaggt |
401 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213872 |
aaggttcaaaagcaaggcacttgt-aatatgttaaaatctttgaaggagatggaaatgactcaaaaaatgacgtctgagagaataaaggt |
31213784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 360
Target Start/End: Original strand, 47895374 - 47895723
Alignment:
| Q |
12 |
atgaatgattcgttgttcttctagggtgtattccaagatcgaaaggagaagaaagtggattcttctgtaaagagaatgctggagatgaaagagaaagaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47895374 |
atgaatgattcgttgttcttctagggtgtattccaagatcgaaaggagaagaaagtggattcttctgtaaagagaatgctggagatgaaagagaaagaat |
47895473 |
T |
|
| Q |
112 |
tatggttgcagttgcagcagaaactttttgacgagnnnnnnnn-gtattttgagcttgaaatggaacaaaagcggaaatccctcattaagaagtttagga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47895474 |
tatggttgcagttgcagcagaaactttttgacgaggaaaaaaaagtattttgagcttgaaatggaacaaaagcggaaatccctcattaagaagtttagga |
47895573 |
T |
|
| Q |
211 |
gacaggaggaagccttagagtatagggaagctgaagtcaaccttagggaaaccaaagttgttgaaaaagagcaagttgtgagtatgatctctgagagaat |
310 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47895574 |
gacaggaggaagccttagagtataggaaagctgaagtcaaccttagggaaaccaagattgttgaaaaagagcaagttgtgagtatgatctctgagagaat |
47895673 |
T |
|
| Q |
311 |
aaaggttccaaagcaaggcacttgtaaatatgttaaaatctttgaaggag |
360 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47895674 |
gaaggttcaaaagcaaggcacttgtaaatatgttaaaatctttgaaggag |
47895723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 159 - 315
Target Start/End: Complemental strand, 4960170 - 4960014
Alignment:
| Q |
159 |
tttgagcttgaaatggaacaaaagcggaaatccctcattaagaagtttaggagacaggaggaagccttagagtatagggaagctgaagtcaaccttaggg |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | || ||||||| || ||||||||||||| |||||||||||| |||||||||| ||||| |
|
|
| T |
4960170 |
tttgagcttgaaatggaacaaaagcggaaatccctagctgaggagtttagcagcaaggaggaagccttggagtatagggaaatcgaagtcaaccataggg |
4960071 |
T |
|
| Q |
259 |
aaaccaaagttgttgaaaaagagcaagttgtgagtatgatctctgagagaataaagg |
315 |
Q |
| |
|
|||| || |||| || ||||||||| | |||||| || |||||||||||||||| |
|
|
| T |
4960070 |
aaacgaaggttggaaaagaagagcaagctttgagtacgaagtctgagagaataaagg |
4960014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University