View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3855_low_7 (Length: 318)
Name: NF3855_low_7
Description: NF3855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3855_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 3563079 - 3563371
Alignment:
| Q |
18 |
gttgagaccaagatctatcacacagtttccatatgttctccatggattgaaagtgtagattactatcaaggactgatgccaaccagcaccataaatcaaa |
117 |
Q |
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| T |
3563079 |
gttgagaccaagatctatcacacagtttccatatgtcctccatggattgaaagtgtagattactatcaaggactgatgccaaccagcaccataaatcaaa |
3563178 |
T |
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| Q |
118 |
tgcgaaattacactnnnnnnnngatgaaatgaagtttctgagtgcattgaacataaagagcacatagatggaagattacatcccctttccattagctttt |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563179 |
tgcgaaattacactaaaaaaaagatgaaatgaagtttctgagtgcattgaacataaagagcacatagatggaagattacatcccctttccattagctttt |
3563278 |
T |
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| Q |
218 |
catcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacggaggaatatccttgcaccaaattgtagaggccctatgct |
310 |
Q |
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| T |
3563279 |
catcagtgggaaccttgtcatgcattaatctccaagaaagcagagacttggacggaggaatatccttgcaccaaattgtagaggcccaatgct |
3563371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 296
Target Start/End: Original strand, 9749488 - 9749605
Alignment:
| Q |
179 |
acatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacggaggaat |
278 |
Q |
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| T |
9749488 |
acatagatggaatgttgcaacccatttccatgagtttttcatcgatgagtactttatcatgcattaatctccaagctagaagagatttttatgggggtat |
9749587 |
T |
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| Q |
279 |
atccttgcaccaaattgt |
296 |
Q |
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| T |
9749588 |
atccttacaccaaattgt |
9749605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 293
Target Start/End: Original strand, 12053842 - 12053963
Alignment:
| Q |
172 |
aaagagcacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacg |
271 |
Q |
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||||||||||| ||||| ||||| || || |||| | | ||||| |||||| | || | |||||||| | |||||||||||||| |||||| || || | |
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| T |
12053842 |
aaagagcacattgatgggagattgcagcctctttgcttcagcttatcatcaataggcattttgtcatgaagtaatctccaagcaatcagagatttagaag |
12053941 |
T |
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| Q |
272 |
gaggaatatccttgcaccaaat |
293 |
Q |
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|||| ||||| |||||||||| |
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| T |
12053942 |
gaggtatatcaatgcaccaaat |
12053963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 178 - 304
Target Start/End: Original strand, 14169886 - 14170012
Alignment:
| Q |
178 |
cacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacggaggaa |
277 |
Q |
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||||| |||||||| || ||||| |||||||| || |||||||| || ||||| ||||||||||||||||||||||| |||||||| ||| | ||||||| |
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| T |
14169886 |
cacattgatggaaggttgcatcctctttccatgagtttttcatctgttggaactttgtcatgcattaatctccaagctagcagagatttgaatggaggaa |
14169985 |
T |
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| Q |
278 |
tatccttgcaccaaattgtagaggccc |
304 |
Q |
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| T |
14169986 |
tatccttgcaccaaattgtagaggccc |
14170012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 30254104 - 30254141
Alignment:
| Q |
214 |
ttttcatcagtgggaaccttgtcatgcattaatctcca |
251 |
Q |
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||||||||||| ||||||||||||||||| |||||||| |
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| T |
30254104 |
ttttcatcagttggaaccttgtcatgcatcaatctcca |
30254141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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