View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3855_low_8 (Length: 273)
Name: NF3855_low_8
Description: NF3855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3855_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 261
Target Start/End: Complemental strand, 8674293 - 8674052
Alignment:
| Q |
21 |
cacgcattgtagctggtcggttaattaagcacgcattatattaacatattatgtgtagattataatagagattaagtaaatccatagaaaaagattgtcc |
120 |
Q |
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| T |
8674293 |
cacgcattgtagctggtcggttaattaagcacgcattatattaacatattatgtgtagattataatagagattaagtaaatccatagaaaaagattgtcc |
8674194 |
T |
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| Q |
121 |
acttccatgagataccaagaaattattaggagtaaaatcccaatttaagaagcttgtttgcttgccttaattgagtgaaatg-ggggtaaatcaaaactc |
219 |
Q |
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| T |
8674193 |
acttccatgagataccaagaaattattaggagtaaaatcccaatttaagaagcttgtttacttgccttaattgagtgaaatgaggggtaaatcaaaactc |
8674094 |
T |
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| Q |
220 |
ggtcaaatggcaagggcgaaaaacatctattaaccccatatt |
261 |
Q |
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| T |
8674093 |
ggtcaaattgcaagggcgaaaaacatctactaaccccatatt |
8674052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 8688260 - 8688383
Alignment:
| Q |
77 |
agattataatagagattaagtaaatccatagaaaaagattgtccacttccatgagataccaagaaattattaggagtaaaatcccaatttaagaagcttg |
176 |
Q |
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| T |
8688260 |
agattataatagagattaagtaaatccatagaaaa-gattgtccacctctatgagataccaataaattattaggaatgaaatcccagtttaagaaacttg |
8688358 |
T |
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| Q |
177 |
tttgcttgccttaattgagtgaaat |
201 |
Q |
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| T |
8688359 |
tttgcttgccttaatttactgaaat |
8688383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 8688166 - 8688264
Alignment:
| Q |
21 |
cacgcattgtagctggtcggttaattaagcacgcattatattaacatattat----gtgtagattataatagagattaagtaaatccatagaaaaagatt |
116 |
Q |
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| T |
8688166 |
cacgcattatagctggtcggttaattaagaacgcattatattaccataatattgatgtgtagattataatagagattaagtaaatccata-aaaaagatt |
8688264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 8692417 - 8692344
Alignment:
| Q |
127 |
atgagataccaagaaattattaggagtaaaatccc-aatttaagaagcttgtttgcttgccttaattgagtgaaatgg |
203 |
Q |
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| T |
8692417 |
atgagatgccaagaaagtattaggagtaaaatcccaaatataagaagcttgt----ttgcgttaattgagtgaaatgg |
8692344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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