View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_12 (Length: 507)
Name: NF3856_high_12
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 11 - 488
Target Start/End: Original strand, 32875016 - 32875493
Alignment:
| Q |
11 |
cagagagattagcaatggatgtataatgaaaccctctcaactagttaatcgtccaagggttaatgttggtggtgatgatctcaggactttctacacaatg |
110 |
Q |
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| T |
32875016 |
cagagagattagcaatggatgtataatgaaaccctctcaactagttaatcgtccaagggttaatgttggtggtgatgatctcaggactttctacacaatg |
32875115 |
T |
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| Q |
111 |
gtaagtatagttattaagaaatattttaaatgnnnnnnntgtgactctaagattgttaatgcttcaaaatatctttcattgccggcacaattgcataaat |
210 |
Q |
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| T |
32875116 |
gtaagtatagttattaagaaatattttaaatgaaaaaaatgtgactctaagattgttaatgcttcaaaatatctttcattgccggcacaattgcataaat |
32875215 |
T |
|
| Q |
211 |
cataattttttcttatagtaaattttagttgtaattttgttagcaggaaaaattgatcacataacattctatcacttgaactttcaaacccaccaaatca |
310 |
Q |
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| T |
32875216 |
cataattttttcttatagtaaattttagttgtaattttgttagcaggaaaaattaatcacataacattctatcacttgaactttcaaacccaccaaatca |
32875315 |
T |
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| Q |
311 |
ccttatgtttcattgagctacaatttaaatcatgtttagcatcttcatgtaatgtgcattaattttggtttggttgagtctcattaggttatggtggacg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32875316 |
ccttatgtttcattgagctacaatttaaatcatgtttagcatcttcatgtaatgtgcattaattttggtttggttgagtctcattaggttatggtggacg |
32875415 |
T |
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| Q |
411 |
cagatgcacctagccctagtaacccttttttgaaggaatacttgcattggtgagttatattgtctctttctttggtaa |
488 |
Q |
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| T |
32875416 |
cagatgcacctagccctagtaacccttttttgaaggaatacttgcattggtgagttatattgtctctttctttggtaa |
32875493 |
T |
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