View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_13 (Length: 499)
Name: NF3856_high_13
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 276 - 494
Target Start/End: Complemental strand, 36890374 - 36890157
Alignment:
| Q |
276 |
aaatataaacggaatagctatgtccaagaggtgtccgttcggtggttcaaatttcatctgagttgtaatttgatcattagtgtcactcttattaatcaaa |
375 |
Q |
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| T |
36890374 |
aaatataaacggaatagccatatccaagaggtgtccgttcggtggttcaaatttcatctgagttgtaatttgattatttgtgtcactcttattaatcaaa |
36890275 |
T |
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| Q |
376 |
tttcccctctccannnnnnnataaaataattattaattactttcacagttatgtatgttcttatttcannnnnnnnnnaatatcactatatatttttgtt |
475 |
Q |
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| T |
36890274 |
tttcccctctccatttttttataaaataattataaattactttcacagttatgtatgttcttatttca-tttttttttaatatcactatatatttttgtt |
36890176 |
T |
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| Q |
476 |
ttggtacattcatctcact |
494 |
Q |
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| T |
36890175 |
ttggtacattcatatcact |
36890157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 36890801 - 36890631
Alignment:
| Q |
22 |
atgtcaatatctgtttctaccnnnnnnncagaagtaaa-tatatgtgtcatccaaaaaagctagcagcgcagcttgtagcttgttgcctgcttatgatct |
120 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||| || |
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| T |
36890801 |
atgtcaatatctgtttctacctaaaaaacagaagtaaaatatatgtgtcatccgaaaaagctagcggcgcagcttgt-------tgcctgcttat---ct |
36890712 |
T |
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| Q |
121 |
tccattaattcatgtgtaattagtcatagaaaaacatttgttatgtcaatgtttttctcttgatatatgcgtaaaagaacaatatattgc |
210 |
Q |
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| T |
36890711 |
tccat--------gtgta-ttagtcatagaaaaacatttgttatgtcaatgtttttctcttgatatatgtgtaaaagaacaatatattgc |
36890631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 29824582 - 29824627
Alignment:
| Q |
336 |
agttgtaatttgatcattagtgtcactcttattaatcaaatttccc |
381 |
Q |
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| T |
29824582 |
agttgtaatttggtcattagtgccactgttattaataaaatttccc |
29824627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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