View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3856_high_15 (Length: 473)
Name: NF3856_high_15
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Original strand, 2184802 - 2185245
Alignment:
| Q |
20 |
catataaagtggatgagaatgctttatggatacatgactccttatgtttcaaagtctccaagagctgcatattacaactatagggatcttgatttaggta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2184802 |
catataaagtggatgagaatgctttatggatacatgactccttatgtttcaaagtctccaagagctgcatattacaactatagggatcttgatttaggta |
2184901 |
T |
|
| Q |
120 |
gcaacaagcatgacaacacaagctactcagaagcaagtgtttggggcatcaagtactttaagggaaactttaagcgtttggcccaaattaagacaaaatt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2184902 |
gcaacaagcatgacaacacaagctactcagaagcaagtgtttggggcatcaagtactttaagggaaactttaagcgtttggcccaaattaagacaaaatt |
2185001 |
T |
|
| Q |
220 |
tgatccccaaaactttttcaggaatgagcagagcattcctcttctgaattcccagccttgaattaataacttaattaagcacttgtaatataagtgtgta |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2185002 |
tgatccccaaaactttttcaggaatgagcagagcattcctcttctgaattcccagccttgaattaataacttaattaagcacttgtaatataagtgtgta |
2185101 |
T |
|
| Q |
320 |
tcatgtaagtttttatgtataagttattatttgtataacaaaacataaaataaagttatcgtgatacaaatcaagatattcagatagcatagactttgcg |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
2185102 |
tcatgtaagtttttatgtataagttattatttgtataacaaaacataaaataacgttatcgtgatatagatcaagatattcagatagcatagactttgca |
2185201 |
T |
|
| Q |
420 |
gccaccacccaaccatgtcaactttcccagtccaccaccctatg |
463 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2185202 |
gccaccacccaaccatgtcaactttcccggtccaccaccctatg |
2185245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 2176846 - 2177156
Alignment:
| Q |
19 |
acatataaagtggatgagaatgctttatggatacatgactccttatgtttcaaagtctccaagagctgcatattacaactatagggatcttgatttaggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2176846 |
acatataaagtggatgagaatgctttatggatacatgactccttatgtttcaaagtctccaagagctgcatattacaactatagggatcttgatttaggt |
2176945 |
T |
|
| Q |
119 |
agcaacaagcatgacaacacaagctactcagaagcaagtgtttggggcatcaagtactttaagggaaactttaagcgtttggcccaaattaagacaaaat |
218 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2176946 |
agcaacaagcatgacaacacaagatactcagaagcaagtgtttggggcatcaagtactttaagggaaactttaagcgtttggcacaaattaagacaaaat |
2177045 |
T |
|
| Q |
219 |
ttgatccccaaaactttttcaggaatgagcagagcattcctcttctgaattcccagccttgaattaataacttaattaagcacttgtaatataagtgtgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||| || |||||| ||| |
|
|
| T |
2177046 |
ttgatccccaaaactttttcaggaatgagcagagcattcctcttctgaattccctcccctgaatttaaaacttaattaagcacttatagtataagcttgt |
2177145 |
T |
|
| Q |
319 |
atcatgtaagt |
329 |
Q |
| |
|
||||||||||| |
|
|
| T |
2177146 |
atcatgtaagt |
2177156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 2153188 - 2153478
Alignment:
| Q |
20 |
catataaagtggatgagaatgctttatggatacatgactccttatgtttcaaagtctccaagagctgcatattacaactatagggatcttgatttaggta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2153188 |
catataaagtggatgagaatgctttatggatacatgactccttatgtttcaaagtctccaagagctgcatattacaactatagggatcttgatttaggta |
2153287 |
T |
|
| Q |
120 |
gcaacaagcatgacaacacaagctactcagaagcaagtgtttggggcatcaagtactttaagggaaactttaagcgtttggcccaaattaagacaaaatt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2153288 |
gcaacaagcatgacaacacaagctactcagaagcaagtgtttggggcatcaagtactttaagggaaactttaagcgtttggcacaaattaagacaaaatt |
2153387 |
T |
|
| Q |
220 |
tgatccccaaaactttttcaggaatgagcagagcattcctcttctgaattcccagccttgaattaataacttaattaagcacttgtaatat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||||| |||||| |
|
|
| T |
2153388 |
tgatccccaaaactttttcaggaatgagcagagcattcctcttctgaattccctcccctgaattaacaacttaatcaagcacttttaatat |
2153478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 2197386 - 2197638
Alignment:
| Q |
19 |
acatataaagtggatgagaatgctttatggatacatgactccttatgtttcaaagtctccaagagctgcatattacaactatagggatcttgatttaggt |
118 |
Q |
| |
|
||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2197386 |
acatataaagtggatgaaaaaactttatagatacatgactccttatgtttcaaagtctccaagagctgcatattacaactatagggatcttgatataggt |
2197485 |
T |
|
| Q |
119 |
agcaacaagcatgacaacacaagctactcagaagcaagtgtttggggcatcaagtactttaagggaaactttaagcgtttggcccaaattaagacaaaat |
218 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
2197486 |
aggaacaagcattttaacacaagctactcagaagcaagtgtttggggcatcaagtactttaagggaaactttaagcgtttggcacaaattaagacaatat |
2197585 |
T |
|
| Q |
219 |
ttgatccccaaaactttttcaggaatgagcagagcattcctcttctgaattcc |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
2197586 |
ttgatccccaaaactttttcaggaatgagcagagtattcctctactaaattcc |
2197638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 291 - 377
Target Start/End: Original strand, 2153581 - 2153663
Alignment:
| Q |
291 |
taattaagcacttgtaatataagtgtgtatcatgtaagtttttatgtataagttattatttgtataacaaaacataaaataaagtta |
377 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
2153581 |
taattaagcacttata-tataagcgtgtatcatgtaagtgtttatgtataagttacg---tgtataacaaaagataaaataaagtta |
2153663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 35539273 - 35539523
Alignment:
| Q |
19 |
acatataaagtggatgagaatgctttatggatacatgactccttatgtttcaaagtctccaagagctgcatattacaactatagggatcttgatttaggt |
118 |
Q |
| |
|
||||||||||||||||| || | | || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35539273 |
acatataaagtggatgaaaaaacataataaatacatgacttcttatgtttcaaagtctccaagagctgcatattacaactatagggatcttgatatagga |
35539372 |
T |
|
| Q |
119 |
agcaacaagcatgacaacacaagctactcagaagcaagtgtttggggcatcaagtactttaagggaaactttaagcgtttggcccaaattaagacaaaat |
218 |
Q |
| |
|
|| ||||||||| | ||||||||||||||| |||||||| || |||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35539373 |
aggaacaagcataataacacaagctactcataagcaagttttaggggtatgaagtactttaagggaaactttaagcgtttggcacaaattaagacaaaat |
35539472 |
T |
|
| Q |
219 |
ttgatccccaaaactttttcaggaatgagcagagcattcctcttctgaatt |
269 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
35539473 |
ttgatccccaaaactttttcaggaaagagcagattattcctcttctaaatt |
35539523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 11810666 - 11810593
Alignment:
| Q |
44 |
tatggatacatgactccttatgtttcaaagtctccaagagctgcatattacaactatagggatcttgatttagg |
117 |
Q |
| |
|
|||| ||||||||| |||||||| |||||| ||||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
11810666 |
tatgcatacatgacaccttatgtatcaaagggtccaagagctgcatatttgaattatagggaccttgatttagg |
11810593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 11802937 - 11802849
Alignment:
| Q |
29 |
tggatgagaatgctttatggatacatgactccttatgtttcaaagtctccaagagctgcatattacaactatagggatcttgatttagg |
117 |
Q |
| |
|
|||||||||| | | |||| ||||||||| |||||||||||||||| ||||||| ||||||| ||||||||||| |||||| |||| |
|
|
| T |
11802937 |
tggatgagaaggttatatgcatacatgacaccttatgtttcaaagtgcccaagagtagcatatttgaactatagggaccttgatatagg |
11802849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 459
Target Start/End: Original strand, 37758817 - 37758896
Alignment:
| Q |
380 |
gtgatacaaatcaagatattcagatagcatagactttgcggccaccacccaaccatgtcaactttcccagtccaccaccc |
459 |
Q |
| |
|
|||||||| ||||||| |||| ||||||||||||||||| ||||||| || | |||| | ||||| || |||||||||| |
|
|
| T |
37758817 |
gtgatacagatcaagacattctgatagcatagactttgcagccaccaacctatcatgctagctttctcattccaccaccc |
37758896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 38059290 - 38059343
Alignment:
| Q |
59 |
ccttatgtttcaaagtctccaagagctgcatattacaactatagggatcttgat |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
38059290 |
ccttttgtttcaaagtctccaagagctgcatatattaactatagagatcttgat |
38059343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 38061164 - 38061111
Alignment:
| Q |
59 |
ccttatgtttcaaagtctccaagagctgcatattacaactatagggatcttgat |
112 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
38061164 |
ccttttgtttcaaagtcaccaagagctgcatatatcaattatagagatcttgat |
38061111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 38073624 - 38073656
Alignment:
| Q |
59 |
ccttatgtttcaaagtctccaagagctgcatat |
91 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
38073624 |
ccttttgtttcaaagtctccaagagctgcatat |
38073656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 18011788 - 18011825
Alignment:
| Q |
276 |
cttgaattaataacttaattaagcacttgtaatataag |
313 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
18011788 |
cttgaataaataacttaattaagcacttataatataag |
18011825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 375
Target Start/End: Original strand, 49060436 - 49060519
Alignment:
| Q |
289 |
cttaattaagcacttgtaatataagtgtgtatcatgtaagtttttatgtataagttattatttgtataacaaaacataaaataaagt |
375 |
Q |
| |
|
||||||||||||||| || ||||| | |||||| ||||| |||||||||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
49060436 |
cttaattaagcacttatagtataatggcttatcatataagtatttatgtataag---ctatttctataacaaaaaataaaataaagt |
49060519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University