View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_18 (Length: 462)
Name: NF3856_high_18
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 41742850 - 41742607
Alignment:
| Q |
17 |
cacagagaggggatttaaacaatcataatcatttgttttaaatcaaatttaattttaagcttcaaaactttggggcatcctttttgctctagaagttatt |
116 |
Q |
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| T |
41742850 |
cacagagaggggatttaaacaatcataatcatttgttttaaatcaaatttaattttaagcttcaaaactttgggtcatcctttttgctctagaagttatt |
41742751 |
T |
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| Q |
117 |
cagtaatatcaaatggatggtaattaaaaggaagcgttatatttgaatagttgtctaaaaatgttcttgcttgggttaggcatgaagcctcatggttgtg |
216 |
Q |
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| T |
41742750 |
cagtaatatcaaatggatggtaattaaaaggaagcgttatatttgaatagttgtctaaaaatgttcttgcttgggttaggcatgaagcctcatggttgtg |
41742651 |
T |
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| Q |
217 |
aaaattgaggtttttcgatgataaactgagaaatattttagtgt |
260 |
Q |
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| T |
41742650 |
aaaattgaggtttttcgatgataaactgacaagtattttagtgt |
41742607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 229 - 443
Target Start/End: Complemental strand, 41742607 - 41742393
Alignment:
| Q |
229 |
tttcgatgataaactgagaaatattttagtgtaaataagcaagcaaatcaagatgttggtgcattagctgaggaaggagtttttgttgaaggaatatcac |
328 |
Q |
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| T |
41742607 |
tttcgatgataaactgagaaatattttagtgtaaataagcaagcaaatcaagatgttggtgcattagctgaggaaggagtttttgttgaaggaatatcac |
41742508 |
T |
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| Q |
329 |
tagaatggtttttagcatgttnnnnnnnntaccaatattaatcaacatatgatagtgggattaaacttggtaaaggaatagtgcagtgtatacaaataca |
428 |
Q |
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| T |
41742507 |
tagaatggtttttagtatgttaaaaaaaataccaatattgatcaacatatgatagtgggattaaacttggtaaaggaatagtgcagtgtatacaaataca |
41742408 |
T |
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| Q |
429 |
attaaattaaaaatc |
443 |
Q |
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| T |
41742407 |
attaaattaaaaatc |
41742393 |
T |
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