View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_19 (Length: 459)
Name: NF3856_high_19
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 437
Target Start/End: Original strand, 20990481 - 20990899
Alignment:
| Q |
14 |
atgaactaccacgagtaccgcacgtgtacccagtctgagtaattacaccttacattatgtgtacttcaccttttcacaagtacccatgcttcaaaggttc |
113 |
Q |
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| T |
20990481 |
atgaactaccatgagtaccgtacgtgtacccagtatgggtaattacac-----attatgtgtacttcaccttttcacaagtacccatgcttcaaaggttc |
20990575 |
T |
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| Q |
114 |
tgacaagtgggcagggacgaatgagcagagcgaattgcgcttggcccaaatgtttgtttttggggcgagtggggtgtgagggacaaagcccccatggtac |
213 |
Q |
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| T |
20990576 |
tgacaagtgggcagggacgaatgagcagagcgaattgcgcttggcccaaatgtttgtttttggggtgagtggggtgtgggggacaaagcccccatgttac |
20990675 |
T |
|
| Q |
214 |
ggttcaagggttttgtgtaaactagtctgtaaccgtagtattttgatgttagttgtaacatcttaaaccttggttattttcactgataataacacagaac |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20990676 |
ggttcaagggttttgtgtaaactagtctgtaaccgtagtattttgatgttagttgtaacatcttaaaccctggttattttcactgataataacacagaac |
20990775 |
T |
|
| Q |
314 |
tacattgtccctatactcagagatgtaggcatacttgtccgcaattcggcaccaaagtgtttctttgtttgcgttttatcgtttcgtttatcttttgtta |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20990776 |
tacattgtccctatactcagagatgtaggcatacttgtccgcaattcggcaccaaagtgtttctttgtttgcgatttatcgtttcgtttatcttttgtta |
20990875 |
T |
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| Q |
414 |
agggttgctgtactaacagtgcct |
437 |
Q |
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| T |
20990876 |
agggttgctgtactaacagtgcct |
20990899 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 28195200 - 28195168
Alignment:
| Q |
74 |
gtacttcaccttttcacaagtacccatgcttca |
106 |
Q |
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| T |
28195200 |
gtacttcacctttttacaagtacccatgcttca |
28195168 |
T |
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