View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3856_high_21 (Length: 441)

Name: NF3856_high_21
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3856_high_21
NF3856_high_21
[»] chr5 (2 HSPs)
chr5 (222-351)||(6229722-6229858)
chr5 (71-122)||(6231356-6231407)
[»] chr7 (1 HSPs)
chr7 (71-114)||(41806602-41806645)
[»] chr3 (2 HSPs)
chr3 (71-115)||(5449939-5449983)
chr3 (71-108)||(48158146-48158183)
[»] chr2 (1 HSPs)
chr2 (77-115)||(6091054-6091092)
[»] scaffold0047 (1 HSPs)
scaffold0047 (71-114)||(31083-31126)
[»] scaffold0005 (1 HSPs)
scaffold0005 (71-114)||(5407-5450)
[»] chr4 (4 HSPs)
chr4 (71-114)||(14834249-14834292)
chr4 (71-110)||(52106251-52106290)
chr4 (71-108)||(39111061-39111098)
chr4 (73-109)||(33432744-33432780)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 351
Target Start/End: Complemental strand, 6229858 - 6229722
Alignment:
Q  222 taggagttaagattcgaacaaagacacttcatttattcac-ttaaacatcnnnnnnnaaaaataccttaaataaaagtctcaatcgttcttagaaa---- 316  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||       |||||||||||||||||||||||| ||||||||||| ||        
T  6229858 taggagttaagattcgaaccaagacacttcatttattcacgttaaacatcttttttaaaaaataccttaaataaaagtctc-atcgttcttaggaaagtt 6229760  T
Q  317 ---tctggaataaatctagtaaacttaattttaaaata 351  Q
        ||  ||||||||||||||||||||||||||||||    
T  6229759 attcctaaaataaatctagtaaacttaattttaaaata 6229722  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 6231407 - 6231356
Alignment:
Q  71 ctacggtaggagatctaagaaggtctcccaccctaaacggcaccaactttaa 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6231407 ctacagtaggagatctaagaaggtctcccaccctaaacggcaccaactttaa 6231356  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 41806645 - 41806602
Alignment:
Q  71 ctacggtaggagatctaagaaggtctcccaccctaaacggcacc 114  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  41806645 ctacggtaggagacctaagaaggtctcccaccctaaacggcacc 41806602  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 5449939 - 5449983
Alignment:
Q  71 ctacggtaggagatctaagaaggtctcccaccctaaacggcacca 115  Q
    |||| |||||||||||||||||||||||||||||||||| |||||    
T  5449939 ctactgtaggagatctaagaaggtctcccaccctaaacgacacca 5449983  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 48158183 - 48158146
Alignment:
Q  71 ctacggtaggagatctaagaaggtctcccaccctaaac 108  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  48158183 ctacggtaggagacctaagaaggtctcccaccctaaac 48158146  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 6091054 - 6091092
Alignment:
Q  77 taggagatctaagaaggtctcccaccctaaacggcacca 115  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  6091054 taggagatctaaaaaggtctcccaccctaaacggcacca 6091092  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 31126 - 31083
Alignment:
Q  71 ctacggtaggagatctaagaaggtctcccaccctaaacggcacc 114  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||    
T  31126 ctacggtaggagacctaagaaggtctccgaccctaaacgacacc 31083  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 5407 - 5450
Alignment:
Q  71 ctacggtaggagatctaagaaggtctcccaccctaaacggcacc 114  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||    
T  5407 ctacggtaggagacctaagaaggtctccgaccctaaacgacacc 5450  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 14834292 - 14834249
Alignment:
Q  71 ctacggtaggagatctaagaaggtctcccaccctaaacggcacc 114  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||    
T  14834292 ctacggtaggagacctaagaaggtctccgaccctaaacgacacc 14834249  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 52106251 - 52106290
Alignment:
Q  71 ctacggtaggagatctaagaaggtctcccaccctaaacgg 110  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  52106251 ctacggtaggagacctaaaaaggtctcccaccctaaacgg 52106290  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 39111098 - 39111061
Alignment:
Q  71 ctacggtaggagatctaagaaggtctcccaccctaaac 108  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  39111098 ctaccgtaggagacctaagaaggtctcccaccctaaac 39111061  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 33432780 - 33432744
Alignment:
Q  73 acggtaggagatctaagaaggtctcccaccctaaacg 109  Q
    |||||||||||||||  ||||||||||||||||||||    
T  33432780 acggtaggagatctataaaggtctcccaccctaaacg 33432744  T

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