View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_26 (Length: 416)
Name: NF3856_high_26
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 53090745 - 53091140
Alignment:
| Q |
19 |
agagagaagaatgagataattaggttagttataagtagtagttagtaatgtgtagtagaaatggacaatattaaaggagacaattggcataatatatggt |
118 |
Q |
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| T |
53090745 |
agagagaagaatgagataattaggttggttataagtagtagttagtaatgtgtagtagaaatggacaatattaaaggagacaattggcataatatatggt |
53090844 |
T |
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| Q |
119 |
atgaagattggaagcttcgtttcttcgcgtccactttactagaacaattctgttatactatctcagaaagagaaccaaagcggtgggtggatatgctatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53090845 |
atgaagattggaagcttcgtttcttcgcgtccacttcactagaacaattctgttatactatctcagaaagagagccaaagcggtgggtggatatgctatt |
53090944 |
T |
|
| Q |
219 |
ggtcttggatattgttcc-----tatgttatgttggacctaacttaatttgcctaaactttgttttatatttaacagaattgaagaggacccttcaccca |
313 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53090945 |
ggtcttggatattgttcctatgttatgttatgttggacctaacctaatttgcctaaactttgttttatatttaacagaattgaagaggacccttcaccca |
53091044 |
T |
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| Q |
314 |
tacccaacttatactataggacttgttgtcttagagaagctagcatttccaaagagagaagctaactcaatgtatagaatctgttattcctttgct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53091045 |
tacccaacttatactataggacttgttgtcttagagaagctagcatttccaaagagagaagctaactcaatgtatagaatctgttattcctttgct |
53091140 |
T |
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