View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3856_high_27 (Length: 408)

Name: NF3856_high_27
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3856_high_27
NF3856_high_27
[»] chr7 (18 HSPs)
chr7 (20-158)||(661016-661154)
chr7 (43-398)||(22069732-22070084)
chr7 (38-308)||(22088209-22088476)
chr7 (43-398)||(22080477-22080841)
chr7 (335-398)||(660944-661007)
chr7 (43-391)||(22063263-22063608)
chr7 (267-314)||(16839562-16839609)
chr7 (120-155)||(20351799-20351834)
chr7 (275-398)||(20351945-20352068)
chr7 (43-155)||(20133648-20133760)
chr7 (187-234)||(6865064-6865111)
chr7 (267-314)||(16846645-16846692)
chr7 (272-314)||(18326068-18326110)
chr7 (267-321)||(20140992-20141046)
chr7 (267-304)||(6864997-6865034)
chr7 (268-321)||(20126362-20126415)
chr7 (122-155)||(20360836-20360869)
chr7 (42-82)||(15572347-15572387)
[»] chr1 (1 HSPs)
chr1 (269-386)||(15961072-15961189)
[»] chr4 (1 HSPs)
chr4 (46-161)||(11971310-11971425)
[»] scaffold0097 (1 HSPs)
scaffold0097 (113-150)||(16720-16757)
[»] chr2 (1 HSPs)
chr2 (113-150)||(20712881-20712918)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 8e-68; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 661154 - 661016
Alignment:
Q  20 tagttcactattctaatctcaaatttggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  661154 tagttcactattctaatctcaaatttggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcaa 661055  T
Q  120 tttgggcgataatgtttggagaaatattcaaaattcccc 158  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  661054 tttaggcgataatgtttggagaaatattcaaaattcccc 661016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 43 - 398
Target Start/End: Original strand, 22069732 - 22070084
Alignment:
Q  43 tttggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcattttgggcgataatgtttggagaa 142  Q
    ||||||||||||| |||||| || | ||||||||||||||| |||  ||   |||||||||| |||||| |||| | |||||||| ||||||||||||||    
T  22069732 tttggttatgataattcaacagaaacttataaggtggtgtatttcactcgaaagacaacaaatgtaagagtttttagtttgggcgttaatgtttggagaa 22069831  T
Q  143 atattcaaaattcccctgtccctcatcatctatacaagatgaacgttgttcatcttagtggtagttttaattggttggcaattcgcaattacaacgacga 242  Q
    |||| ||| |||||| | |   ||||||||    | ||||||| ||| | ||| | || |||||| |||||||||||||||||| |||||||| |    |    
T  22069832 atatccaagattcccatatgattcatcatcatcgccagatgaaggttatgcatgtgagaggtagtgttaattggttggcaattcacaattacatcagtta 22069931  T
Q  243 ggactacgaatgcaaggatattgatactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggt 342  Q
      | ||  | | ||||||||||   ||||||||| |||||||||||||||||||| ||||||| |||||||| ||| || ||||  | |||||||  |||    
T  22069932 ctattataatttcaaggatatt---actattgaggaatttgtgattatttcacttgatttgggtaccgagacacatactaagttgttgcctcctcacggt 22070028  T
Q  343 ttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgcctttg 398  Q
    ||| | ||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  22070029 ttcgatgaagtgccatttgttataccaaatctaagtgttttaaaggattgtctttg 22070084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 308
Target Start/End: Original strand, 22088209 - 22088476
Alignment:
Q  38 tcaaatttggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcattttgggcgataatgtttg 137  Q
    |||| ||||||||||||| |||||| || | ||||||||||||||| |||  ||| ||||||||||| |||||| |||| | |||||||| |||||||||    
T  22088209 tcaagtttggttatgataattcaacagaaacttataaggtggtgtatttcactccagagacaacaaatgtaagagtttttagtttgggcgttaatgtttg 22088308  T
Q  138 gagaaatattcaaaattcccctgtccctcatcatctatacaagatgaacgttgttcatcttagtggtagttttaattggttggcaattcgcaattacaac 237  Q
    ||||||||| ||| |||||||| |  ||||||||||   |  |  ||| |||||  || | || |||||| |||||||||||||||||| ||||||||      
T  22088309 gagaaatatccaagattcccctatgactcatcatcttcgccggtggaaggttgtgtatgtgagaggtagtgttaattggttggcaattcacaattacatt 22088408  T
Q  238 gacgaggactacgaatgcaaggatattgatactattgagcaatttgtgattatttcacttaatttgggcac 308  Q
    |  || || ||  | ||||||| |||   ||||||||||||||||||||||||||||||| ||||||||||    
T  22088409 ggtgatgattataattgcaagggtat---tactattgagcaatttgtgattatttcacttgatttgggcac 22088476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 43 - 398
Target Start/End: Original strand, 22080477 - 22080841
Alignment:
Q  43 tttggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcattttgggcgataatgtttggagaa 142  Q
    ||||||||||||| |||||| || | ||||||||||||||| |||  |||  | ||||||||||||||| |||||| ||| ||| | ||||||||||||     
T  22080477 tttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaaaacaacaaacgtaagagttttcagtttaggcaacaatgtttggagag 22080576  T
Q  143 atattcaaaattcccctgt---------ccctcatcatctata---caagatgaacgttgttcatcttagtggtagttttaattggttggcaattcgcaa 230  Q
    |||||||||||||||| ||          | |||||||| |||   ||| ||||  ||||| ||| | ||| ||||| |||||||||||||||||| |||    
T  22080577 atattcaaaattcccccgtggtccatcatcatcatcatcaatatcgcaaaatgagtgttgtgcatttgagtagtagtgttaattggttggcaattcacaa 22080676  T
Q  231 ttacaacgacgaggactacgaatgcaaggatattgatactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactc 330  Q
    ||| | |   || || ||  | ||||||||||| |   ||||||| |||||| |||||||||||||| |||||||||||||||| ||| || |||| |      
T  22080677 ttatatccgtgatgattattattgcaaggatatcg---ctattgaacaatttatgattatttcacttgatttgggcaccgagacacatgctaagtttcgg 22080773  T
Q  331 cctcctcgaggtttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgcctttg 398  Q
    |||||||   |||||   ||| | || ||||||||||||||||||||| ||||||||||||| |||||    
T  22080774 cctcctcacagtttcgttgaagttccctttgttataccaaatctaagtatgttaaaggattgtctttg 22080841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 661007 - 660944
Alignment:
Q  335 ctcgaggtttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgcctttg 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  661007 ctcgaggtttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgtctttg 660944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 43 - 391
Target Start/End: Original strand, 22063263 - 22063608
Alignment:
Q  43 tttggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcattttgggcgataatgtttggagaa 142  Q
    ||||||||||||| |||||| || | ||||||||||||||| |||  ||   |||||||||| |||||| |||| | |||||||| ||||||||||||||    
T  22063263 tttggttatgataattcaacagaaacttataaggtggtgtatttcactcgaaagacaacaaatgtaagagtttttagtttgggcgttaatgtttggagaa 22063362  T
Q  143 atattcaaaattcccctgtccctcatcatctatacaagatgaacgttgttcatcttagtggtagttttaattggttggcaattcgcaattacaacgacga 242  Q
    |||| ||| |||||||| |   ||||||||  |   ||||||| ||||| ||| | |  | |||| |||||||||||||||||| ||||||||     ||    
T  22063363 atatccaagattcccctatgattcatcatcattggcagatgaaggttgtgcatgtgaaagatagtgttaattggttggcaattcacaattacattagtga 22063462  T
Q  243 ggactacgaatgcaaggatattgatactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggt 342  Q
     || ||  | ||| ||| |||   |||||||| |||||||||||||||||||||| |||||||||| ||| |  || || | ||  | |||||||  |||    
T  22063463 tgattataattgcgagggtat---tactattgggcaatttgtgattatttcacttgatttgggcactgaggcatatactaaattgtttcctcctcatggt 22063559  T
Q  343 ttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggatt 391  Q
    |||   ||| | ||||||||||||||||| |||||||| ||||| ||||    
T  22063560 ttcagtgaagtaccatttgttataccaaaactaagtgtcttaaatgatt 22063608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 16839609 - 16839562
Alignment:
Q  267 tactattgagcaatttgtgattatttcacttaatttgggcaccgagac 314  Q
    |||| |||||||||||||||||||||||||| |||||||||| |||||    
T  16839609 tactgttgagcaatttgtgattatttcacttgatttgggcacggagac 16839562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 155
Target Start/End: Original strand, 20351799 - 20351834
Alignment:
Q  120 tttgggcgataatgtttggagaaatattcaaaattc 155  Q
    ||||||||||||||||||||||||||||||||||||    
T  20351799 tttgggcgataatgtttggagaaatattcaaaattc 20351834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 398
Target Start/End: Original strand, 20351945 - 20352068
Alignment:
Q  275 agcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttataccaaatct 374  Q
    ||||||||||||| ||||| ||| |||||| ||| || |||||||||  | |  | || |||| |||||||  |||| ||||| | ||| ||||| ||||    
T  20351945 agcaatttgtgatcatttctcttgatttggacactgaaacgcattctctgcttttgccacctcaaggtttcacagaagtgccaatcgttgtaccatatct 20352044  T
Q  375 aagtgtgttaaaggattgcctttg 398  Q
    |||||||||||||||||| |||||    
T  20352045 aagtgtgttaaaggattgtctttg 20352068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 20133760 - 20133648
Alignment:
Q  43 tttggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcattttgggcgataatgtttggagaa 142  Q
    ||||| |||| || ||||||||||| ||| ||||| ||||| ||  ||||  | |||||||| |||||  |||||| ||| ||||||||| |||||||||    
T  20133760 tttggctatgttaattcaaccgacacttacaaggtcgtgtatttagttccaaatacaacaaatgtaagtgttttcagttttggcgataatatttggagaa 20133661  T
Q  143 atattcaaaattc 155  Q
     ||||||| ||||    
T  20133660 ctattcaagattc 20133648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 6865111 - 6865064
Alignment:
Q  187 gttgttcatcttagtggtagttttaattggttggcaattcgcaattac 234  Q
    ||||| |||||| |||||||| ||| ||||||||||||||||||||||    
T  6865111 gttgtgcatcttggtggtagtgttacttggttggcaattcgcaattac 6865064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 16846692 - 16846645
Alignment:
Q  267 tactattgagcaatttgtgattatttcacttaatttgggcaccgagac 314  Q
    |||| |||||||||||||||||||||| ||| |||||||||| |||||    
T  16846692 tactgttgagcaatttgtgattatttctcttgatttgggcacggagac 16846645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 18326068 - 18326110
Alignment:
Q  272 ttgagcaatttgtgattatttcacttaatttgggcaccgagac 314  Q
    |||||||||||| ||||||||||||| |||||||||| |||||    
T  18326068 ttgagcaatttgcgattatttcacttgatttgggcacggagac 18326110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 20141046 - 20140992
Alignment:
Q  267 tactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattct 321  Q
    |||| |||| |||||||||||| |||| ||| |||||||||||||||| ||||||    
T  20141046 tactcttgaccaatttgtgattgtttctctttatttgggcaccgagacacattct 20140992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 6865034 - 6864997
Alignment:
Q  267 tactattgagcaatttgtgattatttcacttaatttgg 304  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  6865034 tactattgagcaatttgagattatttcacttcatttgg 6864997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 20126415 - 20126362
Alignment:
Q  268 actattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattct 321  Q
    |||||| ||||||||||||||||||| ||| | |||||||| ||||| ||||||    
T  20126415 actattcagcaatttgtgattatttcccttgacttgggcactgagacacattct 20126362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 20360836 - 20360869
Alignment:
Q  122 tgggcgataatgtttggagaaatattcaaaattc 155  Q
    ||||||||||||||||||||||| ||||||||||    
T  20360836 tgggcgataatgtttggagaaatgttcaaaattc 20360869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 15572387 - 15572347
Alignment:
Q  42 atttggttatgatagttcaaccgacatttataaggtggtgt 82  Q
    |||||||||||||| ||||||||||| ||| ||||||||||    
T  15572387 atttggttatgataattcaaccgacacttacaaggtggtgt 15572347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 386
Target Start/End: Original strand, 15961072 - 15961189
Alignment:
Q  269 ctattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttatacc 368  Q
    ||||||| || ||||||||| |||||||| |||||||||| ||||| ||| || ||||    ||||||  ||||||| | ||| | |||| ||||| |||    
T  15961072 ctattgaacattttgtgattgtttcacttgatttgggcactgagacacatactcagttggcacctcctaaaggtttcaatgaagttccatatgttaaacc 15961171  T
Q  369 aaatctaagtgtgttaaa 386  Q
    ||||||||||||||||||    
T  15961172 aaatctaagtgtgttaaa 15961189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 11971425 - 11971310
Alignment:
Q  46 ggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcattttgggcgataatgtttggagaaata 145  Q
    |||||||||| ||||| | ||| |||||| | |||||| ||| |||  || ||||||| ||||||| |||||| | | ||| |||||||||||||||  |    
T  11971425 ggttatgataattcaagcaacacttataaagcggtgtatttcattctagatacaacaatcgtaagagttttcagtataggcaataatgtttggagaagca 11971326  T
Q  146 ttcaaaattcccctgt 161  Q
    |||||||||| |||||    
T  11971325 ttcaaaattctcctgt 11971310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 16757 - 16720
Alignment:
Q  113 ttttcattttgggcgataatgtttggagaaatattcaa 150  Q
    |||||| |||||||||||||||||||||||||||||||    
T  16757 ttttcactttgggcgataatgtttggagaaatattcaa 16720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 20712918 - 20712881
Alignment:
Q  113 ttttcattttgggcgataatgtttggagaaatattcaa 150  Q
    |||||| |||||||||||||||||||||||||||||||    
T  20712918 ttttcactttgggcgataatgtttggagaaatattcaa 20712881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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