View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_33 (Length: 356)
Name: NF3856_high_33
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 14706796 - 14706495
Alignment:
| Q |
18 |
ttccttgctctttttgcttcacctcacatactatactatagtgttataaagtttgggccttttaaaatttagggtttatgattaattgttgctaaattcg |
117 |
Q |
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| T |
14706796 |
ttccttgccctttttgcttcacctcacatactatactatagtgttataaagtttggaccttttaaaatttagggtttatgattaattgatgctaaattcg |
14706697 |
T |
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| Q |
118 |
ttttggtttctaattaggtcgttggagacaaatgggatacatatcttgaacttctgcaaagtggttacactgaagggtcagtacccttatccctctcttt |
217 |
Q |
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| T |
14706696 |
ttttggtttctaattaggtcgttggagacaaatgggatacatatcttgaacttctgcaaagtggttacactgaagggtcagtacccttatccctctcttt |
14706597 |
T |
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| Q |
218 |
tgctatttgtgtttctagggtttttcctcttttgattaatcaaagtatatttattatttatctatctgagtatggtgttgtagtgaatgaaaatttgaat |
317 |
Q |
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| T |
14706596 |
tgctatttgtgtttctagggtttttcctcttttgattaatcaaagtatatttattatttatctatctgagtatggtgttgtagtgaatgaaaatttgaat |
14706497 |
T |
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| Q |
318 |
gg |
319 |
Q |
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| T |
14706496 |
gg |
14706495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 243
Target Start/End: Complemental strand, 14716897 - 14716727
Alignment:
| Q |
77 |
ttttaaaatttagggtttatgatta--attgttgctaaattcgttttggtt--tctaattaggtcgttggagacaaatgggatacatatcttgaacttct |
172 |
Q |
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| T |
14716897 |
ttttgaaatttagggtttatgattataatttatgctaaatttgatctgtttcttctaattaggtcattggaaacaaatgggattcttaccttgactttct |
14716798 |
T |
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| Q |
173 |
gcaaagtggttacactgaagggtcagtacccttatccctctcttttgctatttgtgtttctagggtttttc |
243 |
Q |
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| T |
14716797 |
tcaagctgattacactgaagggttagtaccctaattgctttctcttcgtatttctgtttctagggtttttc |
14716727 |
T |
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