View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_35 (Length: 351)
Name: NF3856_high_35
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_35 |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 9 - 336
Target Start/End: Original strand, 34112533 - 34112863
Alignment:
| Q |
9 |
agcagagatgaatccattctgatccttgtcgaacactctaaacgcttctttcagttcttcttctgaatctgtgtctttcattttccttgccataaggttt |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34112533 |
agcagaaatgaatccattctgatccttgtcgaacactctaaacgcttctttcagttcttcttctgaatctgtgtctttcattttccttgccataaggttt |
34112632 |
T |
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| Q |
109 |
agaaattcaggaaaatcgattgtgccgttaccatcggcatctacttcgtttatcatgtcttgtagctctgcctctgttggattctggcctaatgatctca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34112633 |
agaaattcaggaaaatcgattgtgccgttaccatcggcatctacttcgtttatcatgtcttgtagctctgcctctgttggattctggcctaatgacctca |
34112732 |
T |
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| Q |
209 |
tcacggttccaagctcctttgttgtgatggaaccttcagaatcatataatgttatg---ttgtgataacttaagaattacggacacgacgaggaacactg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34112733 |
tcacggttccaagctcctttgttgtgatggaaccttcagaatcatataatgttatgcaattgtgataacttaagaattacggacacgacgaggaacacta |
34112832 |
T |
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| Q |
306 |
gacatgatactaacacgttaacatcaataat |
336 |
Q |
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| T |
34112833 |
gacatgatactgacacgttaacatcaataat |
34112863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 8921242 - 8921476
Alignment:
| Q |
9 |
agcagagatgaatccattctgatccttgtcgaacactctaaacgcttctttcagttcttcttctgaatctgtgtctttcattttccttgccataaggttt |
108 |
Q |
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| T |
8921242 |
agcagaaatgaaaccgttctgatccttgtcaaaaacccgaaacgcttctttcagctcctcctcagagtcggtgtccttcatcttccttgccatgaggtta |
8921341 |
T |
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| Q |
109 |
agaaattcaggaaaatcgattgtgccgttaccatcggcatctacttcgtttatcatgtcttgtagctctgcctctgttggattctggcctaatgatctca |
208 |
Q |
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| T |
8921342 |
agaaactcggggaagtcaatagtaccattcccatcagcatctacttcattgatcatgtcctgaagctctgcctcagttgggttttgccccaatgaacgca |
8921441 |
T |
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| Q |
209 |
tcacggttccaagctcctttgttgtgatggaacct |
243 |
Q |
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| T |
8921442 |
taacagttccaagctccttggttgtgatgcaacct |
8921476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 35783 - 35946
Alignment:
| Q |
25 |
ttctgatccttgtcgaacactctaaacgcttctttcagttcttcttctgaatctgtgtctttcattttccttgccataaggtttagaaattcaggaaaat |
124 |
Q |
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|||||||||||||| ||||| | ||| ||||| || ||||| || |||||||| ||||||||||| || | ||||| ||||| || |||||||| |||| |
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| T |
35783 |
ttctgatccttgtcaaacacacgaaaggcttccttaagttcctcctctgaatcagtgtctttcatcttacgggccatcaggttgaggaattcagggaaat |
35882 |
T |
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| Q |
125 |
cgattgtgccgttaccatcggcatctacttcgtttatcatgtcttgtagctctgcctctgttgg |
188 |
Q |
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| T |
35883 |
caatggtaccattgccatcagcatcaacttcattgatcatgtcttgtagctctgcctcagttgg |
35946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 38317328 - 38317545
Alignment:
| Q |
10 |
gcagagatgaatccattctgatccttgtcgaacactctaaacgcttctttcagttcttcttctgaatctgtgtctttcattttccttgccataaggttta |
109 |
Q |
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||||||||||| ||||| ||||||||||| ||||| | || ||||| || || ||||| || ||||| || || ||||| || | ||||| ||||| | |
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| T |
38317328 |
gcagagatgaaaccattttgatccttgtcaaacacacggaaagcttccttaagctcttcctcggaatcagtatccttcatcttgcgggccatcaggttaa |
38317427 |
T |
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| Q |
110 |
gaaattcaggaaaatcgattgtgccgttaccatcggcatctacttcgtttatcatgtcttgtagctctgcctctgttggattctggcctaatgatctcat |
209 |
Q |
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| T |
38317428 |
ggaattcagggaaatcaatggtaccgtttccatcagcatcaacctcgttgatcatgtcctgcaattcagcctcagttgggttctggcctagtgacctcat |
38317527 |
T |
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| Q |
210 |
cacggttccaagctcctt |
227 |
Q |
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|| || || |||||||| |
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| T |
38317528 |
tacagtcccgagctcctt |
38317545 |
T |
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