View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_36 (Length: 341)
Name: NF3856_high_36
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 36948251 - 36947929
Alignment:
| Q |
16 |
aatggagctgcacgagatgttacaagaagtaagaatgttaatgtaacatgaaagaaagcaagaaggtgaggtttgtgatggtagcaagatggtgccataa |
115 |
Q |
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| T |
36948251 |
aatggagctgcacgagatgttacaagaagcaagaatgttaatgttacatgaaagaaagcaagaaggtgaggtttgtgatggtagcaagatggtgccataa |
36948152 |
T |
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| Q |
116 |
ttgcaagtttgatattgggtggaaataatgaaattattatacaaaatgagcatggagtggttgcatgtagttgtagtagtcattgatgcgtaaaggttac |
215 |
Q |
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| T |
36948151 |
ttgcaagtttgatattgcttggaaataatggaattattacacaaaatgagcatggagtggttgcatgtagttgtaatagtcattgatgggtaaaggttac |
36948052 |
T |
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| Q |
216 |
ttaatgtgttaggtagttgaatgagtcattggatttacctctgaattagtcttggtcaattcgtttatgagtcctctgtttctaataatccatctatata |
315 |
Q |
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| T |
36948051 |
ttaatgtgttaggtagttgaatgagtctttggatttacctctgaattagtcttggtcaattcgtttatgagtcctctgtttctaataatccatctatata |
36947952 |
T |
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| Q |
316 |
cgtgcaaaaatgacctatgcttc |
338 |
Q |
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| T |
36947951 |
cgtgcaaaaatgacctaagcttc |
36947929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 36958385 - 36958233
Alignment:
| Q |
16 |
aatggagctgcacgagatgttacaagaagtaagaatgttaatgtaacatgaaagaaagcaagaaggtgaggtttgtgatggtagcaagatggtgccataa |
115 |
Q |
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| T |
36958385 |
aatggagctgcacgagatgttacaagaagcaagaatgttaatgtaacatgaaagaaagcaagaagatgaggtttgtgattgtagcaagatgatgccataa |
36958286 |
T |
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| Q |
116 |
ttgcaagtttgatattgggtggaaataatgaaattattatacaaaatgagcatgga |
171 |
Q |
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| T |
36958285 |
ttgtaaatttgatattgggtggaaataatgga---attatacaaaatgagcatgga |
36958233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 36938004 - 36937931
Alignment:
| Q |
16 |
aatggagctgcacgagatgttacaagaagtaagaatgttaatgtaacatgaaagaaagcaagaaggtgaggttt |
89 |
Q |
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|||||||||||| |||||||||||||||| ||| || || ||| |||||||||||||||||||| |||||||| |
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| T |
36938004 |
aatggagctgcatgagatgttacaagaagcgagagtgatagtgttacatgaaagaaagcaagaagatgaggttt |
36937931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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