View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3856_high_39 (Length: 332)
Name: NF3856_high_39
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 32168931 - 32168628
Alignment:
| Q |
11 |
cagagattatgattttaatgtttaacaaaagagaataatgttcctaaaaaatatataatgttaatagatatggtgatttatctttaccaaatatattcat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32168931 |
cagagattatgattttaatgtttaacaaaagagaataatgttcctaaaaaaaatataatgttaatagatatggtgatttatctttaccaaatatattcat |
32168832 |
T |
|
| Q |
111 |
ttatagccctttattttactgaaaattcattcatgtcgtatgaaaatgttttatcgtataatattttttacgtcgaaagaatagcattcaaataaaattg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32168831 |
ttatagccctttattttactgaaaattcattcatgtcgtatgaaaatgttttatcgtataatattttttacgtcgaaagaatagcattcaaataaaattg |
32168732 |
T |
|
| Q |
211 |
aatgtctcccaaaaaagaaattaatgtacattataattttgagaggaaaatttaatgccttatatttcttattaactaactgtacaaatcaaatgtaagc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32168731 |
aatgtctcccaaaaaagaaattaatgtacattataattttgagaggaaaatttaatgccttatatttcttattaactaactgtacaaatcaaatgtaagc |
32168632 |
T |
|
| Q |
311 |
catg |
314 |
Q |
| |
|
|||| |
|
|
| T |
32168631 |
catg |
32168628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University