View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_43 (Length: 309)
Name: NF3856_high_43
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 1530382 - 1530102
Alignment:
| Q |
1 |
attaggccaaattgaaatgaacataaatataagaatagtgcatattattctgcaaatccatcctaactaattcataattaatcaaacaatctattcctcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530382 |
attaggccaaattgaaatgaacataaatataagaatagtgcatattattctgcaaatccatcctaactaattcataattaatcaaacaatctattcctcc |
1530283 |
T |
|
| Q |
101 |
aacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattccaaaaaacacaaattatatacagctaaaaataactaacatctcaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530282 |
aacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattccaaaaaacacaaattatatacagctaaaaataactaacatctcaataa |
1530183 |
T |
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| Q |
201 |
tcaatcaccatttcaccactcaatagaatccagcaaattatcatcaagcatactcagaaccaaggatcactctgataaatt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530182 |
tcaatcaccatttcaccactcaatagaatccagcaaattatcatcaagcatactcagaaccaaggatcactctgataaatt |
1530102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 22476332 - 22476614
Alignment:
| Q |
1 |
attaggccaaattgaaatgaacataaatataagaatagtgcatattattctgcaaatccatcctaactaattcataattaatcaaacaatctattcctcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22476332 |
attaggccaaattgaaatgaacataaatataagaatagtgcatattattctgcaaatccatcctaactaattcataattaatcaaacaatctattcctcc |
22476431 |
T |
|
| Q |
101 |
aacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattcc-aaaaaacacaaattatatacagctaaaaataactaacatctcaata |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
22476432 |
aacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattccaaaaaaacaaaaattatatacaactaaaaataactaacatctcaata |
22476531 |
T |
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| Q |
200 |
atcaatcaccatttcaccactcaat-agaatccagcaaattatcatcaagcatactcagaaccaaggatcactctgataaatt |
281 |
Q |
| |
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| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22476532 |
accaatcaccatttcaccactcaataagaatccagcaaattatcatcaagcatacccagaaccaaggatcactctgataaatt |
22476614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 26842160 - 26841876
Alignment:
| Q |
1 |
attaggccaaattgaaatgaacataaatataagaa---tagtgcatattattctgcaaatccatcctaactaattcataattaatcaaacaatctattcc |
97 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26842160 |
attaggccaaattgaaatgaacataaatataagaagaatagtgcatattattctgcaaatccatcctaactaattcacaattaatcaaacaatctattcc |
26842061 |
T |
|
| Q |
98 |
tccaacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattccaaaaaacacaaattatatacagctaaaaataactaacatctcaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
26842060 |
tccaacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaatttccaaaaaacacagattatatacaactaaaaataactaacatctcaa |
26841961 |
T |
|
| Q |
198 |
taatcaatcaccatttcaccactcaat-agaatccagcaaattatcatcaagcatactcagaaccaaggatcactctgataaatt |
281 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26841960 |
taatcaatcaccatttcaccactcaataagaatctagcaaattatcatcaagcatacccagaaccaaggatcactctgataaatt |
26841876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 39 - 280
Target Start/End: Complemental strand, 29099432 - 29099185
Alignment:
| Q |
39 |
tgcatattattctgcaaatccatcctaactaattcataattaatcaaacaatctattcctccaacaaaaaacactacttttcaaaccagtacatatcaat |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
29099432 |
tgcatattattctgcaaatccatcctaactaattcctaattaatcaagcaatctcttccacagacaaaaaacactacttttcaaaccagtacatatcaat |
29099333 |
T |
|
| Q |
139 |
caaataccaaattccaaaaaacac-----aaattatatacagctaaaaataactaacatctcaataatcaatcaccatttcaccactcaata-gaatcca |
232 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29099332 |
caaataccaaattccaaaaaacacagattatattatatacagctaaaagtaactaacatctcaataatcaatcaccatttcaccactcaatatgaatcca |
29099233 |
T |
|
| Q |
233 |
gcaaattatcatcaagcatactcagaaccaaggatcactctgataaat |
280 |
Q |
| |
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||||| ||||||||||||| ||||| |||| ||||||||||||||| |
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| T |
29099232 |
gcaaaccatcatcaagcataaccagaagcaagaatcactctgataaat |
29099185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 165 - 280
Target Start/End: Complemental strand, 21923182 - 21923066
Alignment:
| Q |
165 |
attatatacagctaaaaataactaacatctcaataatcaatcaccatttcaccactcaat-agaatccagcaaattatcatcaagcatactcagaaccaa |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |
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| T |
21923182 |
attatatacagctaaaaataactaacatctcaataattaatcaccatttcaccactcaataagaatccaacaaattatcatcaagcataaccagaaccaa |
21923083 |
T |
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| Q |
264 |
ggatcactctgataaat |
280 |
Q |
| |
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||||||||||||||||| |
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| T |
21923082 |
ggatcactctgataaat |
21923066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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