View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3856_high_45 (Length: 305)
Name: NF3856_high_45
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_45 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 53090677 - 53090428
Alignment:
| Q |
14 |
gagatagacacaagggcgccattcaggtccgtcaaagaggctgttacattattcggtgataaagttttagctggagagctctatgcaactgcaaccaaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53090677 |
gagatagacacaagggcgccattcaggtccgtcaaagaggctgttacattattcggtgataaagttttagctggagagctctatgcaactgcaaccaaac |
53090578 |
T |
|
| Q |
114 |
tcaaacaccaggttctatacaccatcacatcactcaattttattagaatatcaaaatggttaattacttgaattatttaaatcaccaataaggaattctt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53090577 |
tcaaacaccaggttctatacaccatcacatcactcaattttattagaatatcaaaatggttaattacttgaattatttaaatcaccaataaggaattctt |
53090478 |
T |
|
| Q |
214 |
ggacattttaattgaaggtccatccatcaataagattctcctatcctatg |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53090477 |
ggacattttaattgaaggtccatccatcaataagattctcctatcctatg |
53090428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University