View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_50 (Length: 285)
Name: NF3856_high_50
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 10396905 - 10396729
Alignment:
| Q |
4 |
actatttataggcttgttttaattattattttaatattaaagagaaaggtaaataaaaaatgctccaaaattgatcctcataatcgtggcagcatatgat |
103 |
Q |
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| T |
10396905 |
actatttacaggcttgttttaattattattttaatgttaaagagaaaggaaaataaaaaat-ctccaaaattgatcctcataatcgtggcagcatatgat |
10396807 |
T |
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| Q |
104 |
tctagtaccaccgtcaaccgcatgcacatcacctcaacttttgctgtcatctttgtcatagcaattgtctttgcatcc |
181 |
Q |
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| T |
10396806 |
tctagtaccactgtcaaccgcatgcacatcacctcaacttttgctgtcatctttgtcatagcaattgtctttgcatcc |
10396729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 10396707 - 10396614
Alignment:
| Q |
180 |
ccactgttgttgctgtcatttatggtcatataa------agaatgaaattgtttcatctaagcaagagaaagatcagagc-atgaagcacaaca |
266 |
Q |
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| T |
10396707 |
ccactgttgttgctgtcatttatggtgatataattataaagaatgaaattgtttcatctaagcaagagaaagataagagcgatgaagcacaaca |
10396614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 48069346 - 48069231
Alignment:
| Q |
1 |
attactatttataggcttgttttaattattattttaatattaaagagaaaggtaaataaaaaatgctccaaaattgatcctcataatcgtggcagcatat |
100 |
Q |
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| T |
48069346 |
attactatttataggcttgttttaattattattttaatattaaagagaaaggcaaataaaaaatgctccaaaattgatcctcataatcgtggcagcatat |
48069247 |
T |
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| Q |
101 |
gattctagtaccaccg |
116 |
Q |
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| T |
48069246 |
gattctagtaccaccg |
48069231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 11740196 - 11740149
Alignment:
| Q |
30 |
tattttaatattaaagagaaaggtaaataaaaaatgctccaaaattga |
77 |
Q |
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| T |
11740196 |
tattttaatattaaagataaaagcaaataaaaaatgctccaaaattga |
11740149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 79 - 242
Target Start/End: Complemental strand, 38282978 - 38282817
Alignment:
| Q |
79 |
cctcataatcgtggcagcatatgattctagtaccaccgtcaaccgcatgcacatcacctcaacttttgctgtcatctttgtcatagcaattgtctttgca |
178 |
Q |
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| T |
38282978 |
cctcataaccggcgcaacatatgattctagtaccac---ccaccgcatgcacatcaccgccattttcgttgtcatccttgacacgacaagggtctttgcg |
38282882 |
T |
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| Q |
179 |
t-ccactgttgttgctgtcatttatggtcatataaagaatgaaattgtttcatctaagcaagaga |
242 |
Q |
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| T |
38282881 |
tcccactgttgttgctgtcatttatggtcatataaaaaaagaaatcgtttcatctaagcaagaga |
38282817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 8913821 - 8913761
Alignment:
| Q |
182 |
actgttgttgctgtcatttatggtcatataaagaatgaaattgtttcatctaagcaagaga |
242 |
Q |
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| T |
8913821 |
actgttgttgctgtcctttacggtcatataaagaatgaaattgtttcatctaagcaagaga |
8913761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 8913885 - 8913823
Alignment:
| Q |
4 |
actatttataggcttgttttaattattattttaatattaaagagaaaggtaaataaaaaatgctcc |
69 |
Q |
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| T |
8913885 |
actatttataggcttgttttaattatt---ttaatattaaagataaaggcaaataaaaaatgctcc |
8913823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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