View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_51 (Length: 279)
Name: NF3856_high_51
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 3324247 - 3324523
Alignment:
| Q |
1 |
ccaacaccgacacaacgcttttacatgtataatcagttctattttctcaaattattactaaagtctgcatgttagtatcagtgtcgtgtttgacgtttgt |
100 |
Q |
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| T |
3324247 |
ccaacaccgacacaacgccgttacatgta--atcagttctattttctcaaattattactgaagtctacatgttagtatcagtgtcgtgtttgacgtttgt |
3324344 |
T |
|
| Q |
101 |
gccgatgtttaatttattgtcatgtgcataa--------aatacaacaatacttgtatgcaaaatttaatggtgaaaagagaatgttacccttttatatg |
192 |
Q |
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| T |
3324345 |
gccgatatttaatttattgtcatgtgcataatatgaatcaatacaacaatacttgtatgcaaaatttaatggtgaaaagagaatattacccttttatatg |
3324444 |
T |
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| Q |
193 |
catcataatcatgtccactcctaagaagctcagcaatgtcattcttcgtaaacttctgaatagctcttctcttcatctc |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3324445 |
catcataatcatgtccactcctaagaagctcagcaatgtcattcttcgtaaacttctgaatagctcttctcttcttctc |
3324523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 8013863 - 8013924
Alignment:
| Q |
31 |
aatcagttctattttctcaaattattactaaagtctgcatgttagtatcagtgtcgtgtttg |
92 |
Q |
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| T |
8013863 |
aatcacttatattttttcaaattattactagtgtctacatgttagtatcagtgtcgtgtttg |
8013924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 1116428 - 1116368
Alignment:
| Q |
30 |
taatcagttctattttctcaaattattactaaagtctgcatgttagtatcagtgtcgtgtt |
90 |
Q |
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|||||| ||| |||||||||||||||||| || |||| ||||||||| ||||||| ||||| |
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| T |
1116428 |
taatcacttcaattttctcaaattattaccaatgtctacatgttagtgtcagtgttgtgtt |
1116368 |
T |
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