View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_54 (Length: 270)
Name: NF3856_high_54
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 48643240 - 48643159
Alignment:
| Q |
60 |
tgtgatgattttagtgttgaatatattaatatatatgacttggttgattatgaagttaagtagctcaaaaattagtgttgag |
141 |
Q |
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| T |
48643240 |
tgtgatgattttagtgttgaatatattaatatatatgacttggttgattatgaagttaagtagctcaaaaattagtgttgag |
48643159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 48643093 - 48643046
Alignment:
| Q |
207 |
cccgctcaaggagacgaaggagttgtaaacactgatgcttgtggtaag |
254 |
Q |
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| T |
48643093 |
cccgctcaaggagacgaaggagttgtaaacactgatgcttgtggtaag |
48643046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 48643296 - 48643260
Alignment:
| Q |
2 |
aatgcataatatatgtaaggttccgttcaaacttctg |
38 |
Q |
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| T |
48643296 |
aatgcataatatatgtaaggtttcgttcaaacttctg |
48643260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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