View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_63 (Length: 250)
Name: NF3856_high_63
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_63 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 14006464 - 14006553
Alignment:
| Q |
40 |
aataacacctaaggttgcaaaatacatgtaggcagtaaagaaagaaaaatctcaaaacctctacctgctaaacatgatagaggcgagaag |
129 |
Q |
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| T |
14006464 |
aataacacctaaggttgcaaaatacatgtaggcagtaaagaaagaaaaatctcaaaacctctacctgctaaacatgacagaggcaagaag |
14006553 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 14006606 - 14006672
Alignment:
| Q |
182 |
tccctaatcacatcaaaagtcatttagactgattccttctaaaaaattacacaacaaacaatacctg |
248 |
Q |
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| T |
14006606 |
tccctaatcacctcaaaagtcatttagacggattccttctaaaaaattacacaacaaacaatacctg |
14006672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 40501532 - 40501575
Alignment:
| Q |
184 |
cctaatcacatcaaaagtcatttagactgattccttctaaaaaa |
227 |
Q |
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| T |
40501532 |
cctaatcacctcaaaagtcatttagattgattccttctaaaaaa |
40501575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 8112584 - 8112617
Alignment:
| Q |
194 |
tcaaaagtcatttagactgattccttctaaaaaa |
227 |
Q |
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| T |
8112584 |
tcaaaagtcatttaaactgattccttctaaaaaa |
8112617 |
T |
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