View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_75 (Length: 228)
Name: NF3856_high_75
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_75 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 45521013 - 45521240
Alignment:
| Q |
1 |
attcaagtcgaaactaccagacatatacatcccaaaacatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctc |
100 |
Q |
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| T |
45521013 |
attcaagtcgaaactaccagacatatacatcccaaaccatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctc |
45521112 |
T |
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| Q |
101 |
atcaatgcccccactggaaaggtctacacctaccacgacgtccaactcacctcccgtaaagttgcctctggtcttcacaaattgggactccaacaaggtg |
200 |
Q |
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| T |
45521113 |
atcaatgcccccaccggaaaggtctacacctaccacgacgtccaactcacctcccgtaaagttgcctctggtcttcacaaattgggactccaacaaggtg |
45521212 |
T |
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| Q |
201 |
aagtcatcatgatcctccttcccaattc |
228 |
Q |
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| T |
45521213 |
aagtcatcatgatcctccttcccaattc |
45521240 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 349765 - 349847
Alignment:
| Q |
26 |
tacatcccaaaacatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctcatcaatgc |
108 |
Q |
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||||| || ||||| || || |||||||||||||| ||||||||||| || ||| ||||||||||| || ||||||||||| |
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| T |
349765 |
tacattcccaaacaccttcctcttcattcatattgctttgaaaatctatcaaaatatggttcacgtccttgcctcatcaatgc |
349847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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