View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3856_high_76 (Length: 228)
Name: NF3856_high_76
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_76 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 49332127 - 49332342
Alignment:
| Q |
3 |
accataaaaatttggttatgccaaaaatgaccaacatatgtgaaacgaaataaaatttccaatgcacccaaaactcattctctcatcttccaatgtaaaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
49332127 |
accataaaaatttggttatgccaaaaatgaccaacttatgtgaaacgaaataaaatttccaatgcatccaaaactcattttctcatcttccaatgtaaaa |
49332226 |
T |
|
| Q |
103 |
agtatttataaggggtaaaactaaaacaagtcagcttaaaagtaagtcaattattttttgacaa-nnnnnnnngcaaatacatcacttaatatgga-ttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
49332227 |
agtatttataaggggtaaaactaaaacaagtcagcttaaaagtaagtcaattattttttgacaatttttttttgcaaatacatcacttaatatggatttt |
49332326 |
T |
|
| Q |
201 |
tttctacaaacttttt |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
49332327 |
tttctacaaacttttt |
49332342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University