View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_8 (Length: 538)
Name: NF3856_high_8
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Complemental strand, 51149774 - 51149275
Alignment:
| Q |
19 |
ccatattggctctccatttctaacacaagctcaacggttatgtaacaggttctacatacttaaattttattcttatacttgatatcatacacaacacaac |
118 |
Q |
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| T |
51149774 |
ccatattggctctccatttctaacacaagctcaacggttatgtaacaggttctacatactgaaattttattcttatacttgatatcatacacaacac--- |
51149678 |
T |
|
| Q |
119 |
actacaattattaattaacaacccacatactcatgagtcataactcaactcatcattgttcgttcatgatcctatcactacnnnnnnnnggtataataaa |
218 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
51149677 |
--tacaattattaattaacaaccctcatactcatgagtcataactcaactcatcattgttcgttcatgatcctatcactacttgtttttgttataataaa |
51149580 |
T |
|
| Q |
219 |
attgtgatgagttgcgtaccggtggctcacccgggtcaggtcaggtcagggcaggcctcaaggctcagagagcgctagcagaggatgatcctattactat |
318 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51149579 |
atttggatgagttgcataccggtggctcacccgggtcaggtcagg-----gcaggcctcaaggctcagagagcgctagcagaggatgatcctattactat |
51149485 |
T |
|
| Q |
319 |
ttaatttacacacaccatgataaggacaaaagtgtctaccaatcttattttacaacaacaattgatgccaaagggatctaagatgtagaagcacttgtgt |
418 |
Q |
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| T |
51149484 |
ttaatttacacacaccatgataaggacaaaagtgtataccaatcttattttacaacaacaattgatgccaaagggatctaagatgtagaatcacttgtat |
51149385 |
T |
|
| Q |
419 |
gtaatgctactaaagaagcatagtcaccacccttatcgagcaatgcttcatgttttcctttctctgctatcacaccattcttaactactgctattaaatc |
518 |
Q |
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| T |
51149384 |
gtaatgctactaaagaagcatagtcaccacccttatggagcaatgcttcatgttttcctttctctgctatcacaccattcttaactactgctattaaatc |
51149285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 360 - 528
Target Start/End: Complemental strand, 51160306 - 51160138
Alignment:
| Q |
360 |
atcttattttacaacaacaattgatgccaaagggatctaagatgtagaagcacttgtgtgtaatgctactaaagaagcatagtcaccacccttatcgagc |
459 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||||| | || | |||||||||||||||||||||||| ||||||| |||| |
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| T |
51160306 |
atcttattttacaacaactattgatgcgaaagggatctaagatgtagaagcacttttatgcagtgctactaaagaagcatagtcaccgcccttatggagc |
51160207 |
T |
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| Q |
460 |
aatgcttcatgttttcctttctctgctatcacaccattcttaactactgctattaaatctgcacctttg |
528 |
Q |
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| T |
51160206 |
aacgcttcatgttttcctttctctgctatcacaccattcttaactactgctattaaatctgcacctttg |
51160138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 396 - 528
Target Start/End: Complemental strand, 51202969 - 51202837
Alignment:
| Q |
396 |
ctaagatgtagaagcacttgtgtgtaatgctactaaagaagcatagtcaccacccttatcgagcaatgcttcatgttttcctttctctgctatcacacca |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51202969 |
ctaagatgtagaagcacttgtgtgtaatgctactaaagaagcatagtcaccacccttatggagcaatgcttcatgttttcctttctctgctatcacacca |
51202870 |
T |
|
| Q |
496 |
ttcttaactactgctattaaatctgcacctttg |
528 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
51202869 |
ttcttaactactgctattaaatctgcacctttg |
51202837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 392 - 524
Target Start/End: Original strand, 29933755 - 29933887
Alignment:
| Q |
392 |
ggatctaagatgtagaagcacttgtgtgtaatgctactaaagaagcatagtcaccacccttatcgagcaatgcttcatgttttcctttctctgctatcac |
491 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||| |
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| T |
29933755 |
ggatctaagatgtagaagcacttgtgtgtaatgctgctaaagaagcatagtcaccacccttatgtagcaatgcctcatgttttcctttctctgatatcac |
29933854 |
T |
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| Q |
492 |
accattcttaactactgctattaaatctgcacc |
524 |
Q |
| |
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|||||||||||| ||||| |||||||||||||| |
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| T |
29933855 |
accattcttaacgactgcaattaaatctgcacc |
29933887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 524
Target Start/End: Complemental strand, 51216613 - 51216502
Alignment:
| Q |
413 |
ttgtgtgtaatgctactaaagaagcatagtcaccacccttatcgagcaatgcttcatgttttcctttctctgctatcacaccattcttaactactgctat |
512 |
Q |
| |
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||||||| ||||||||||||||||||||| |||||||| | || |||| |||||||||||||||||| | ||||| ||||| ||||| ||||| || |
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| T |
51216613 |
ttgtgtgcaatgctactaaagaagcataggtgccacccttgttgatcaatatgtcatgttttcctttctcttcaatcactccatttttaacaactgcaat |
51216514 |
T |
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| Q |
513 |
taaatctgcacc |
524 |
Q |
| |
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| ||| |||||| |
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| T |
51216513 |
tgaatttgcacc |
51216502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 509
Target Start/End: Original strand, 49733899 - 49733985
Alignment:
| Q |
423 |
tgctactaaagaagcatagtcaccacccttatcgagcaatgcttcatgttttcctttctctgctatcacaccattcttaactactgc |
509 |
Q |
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||||||||||||||||||| ||||| ||| | |||||| | |||||| |||||||||||| | ||||| ||||| ||||| ||||| |
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| T |
49733899 |
tgctactaaagaagcataggtaccactcttgttgagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgc |
49733985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 524
Target Start/End: Complemental strand, 36289263 - 36289172
Alignment:
| Q |
433 |
gaagcatagtcaccacccttatcgagcaatgcttcatgttttcctttctctgctatcacaccattcttaactactgctattaaatctgcacc |
524 |
Q |
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|||||||||| ||| || || | || ||||| |||||| ||||||||||||| || || |||||||| || ||||| |||||||||||||| |
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| T |
36289263 |
gaagcatagtgacctcctttgttgatcaatgtttcatgatttcctttctctgtaatgaccccattcttcaccactgcaattaaatctgcacc |
36289172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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