View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_high_84 (Length: 210)
Name: NF3856_high_84
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_high_84 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 37209042 - 37208865
Alignment:
| Q |
17 |
cagacacactaaacaaccaatcatacacatcccaaaacacatgcacaggttgtttattaaccataacagtttggttccctctaaacttccactgcaaatt |
116 |
Q |
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| T |
37209042 |
cagacacactaaacaaccaatcatatacatcccaaaacacatgcacaggttgtttattaaccataacagtttggttccctctaaacttccactgcaaatt |
37208943 |
T |
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| Q |
117 |
cttaatatgaatcaaaacaatcccatcaatactaatccacatttcaggatctttgttgccagcagttgaactttcaac |
194 |
Q |
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| T |
37208942 |
cttaatatgaatcaaaacaatcccatcaatactaatccacatttcaggatctttgttgccagcagttgaactttcaac |
37208865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 29503958 - 29503814
Alignment:
| Q |
23 |
cactaaacaaccaatcatacacatcccaaaacacatgcacaggttgtttattaaccataacagtttggttccctctaaacttccactgcaaattcttaat |
122 |
Q |
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|||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
29503958 |
cactaaacaaccaatcatgaacatcccaaaaaacttgcacaggttgtttattaaccataacagtttgattccctctaaatttccactgcaaattcttaac |
29503859 |
T |
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| Q |
123 |
atgaatcaaaacaatcccatcaatactaatccacatttcaggatc |
167 |
Q |
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| T |
29503858 |
atgaatcaaaacaattccatcaatgctaatccacatttcaggatc |
29503814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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