View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3856_low_1 (Length: 1316)
Name: NF3856_low_1
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 543 - 933
Target Start/End: Complemental strand, 24524519 - 24524129
Alignment:
| Q |
543 |
gctagtcctaggggatttgtttgtttctctatggtagccgtttggttttgagcaacgtgtgtgcgctccaactctgtatgtttcacttgtcgtgtagcat |
642 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
24524519 |
gctagtcctaggggatttgtttgtttctctatggtagccgtttggttttgagcaacgtgtgtgcgctccaactttgtatgtttctcttgtcgtgtagcat |
24524420 |
T |
|
| Q |
643 |
atctcgcggtaataatagtaaaaaatacaaattgatacaatcaaaagccaactgtataccttaatattatagatttttacgagccttcaatccacaattc |
742 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24524419 |
atctcgcggtaataatagtaaaaaatacaaattgatacaatcaaaagccaactgtataccttaatattatagatttttacgagccttcaatccacaattc |
24524320 |
T |
|
| Q |
743 |
ctccaaacttggaaataacttcctgcattcattggcacgatactgcatccaaatttatttctgatattacgaaaattcccctcgtcttacattcaaccat |
842 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24524319 |
ctccaaacttggaaataacttcctgcattcattggcacgatactgcatccaaatttatttctgatattacgaaaattcccctcgtcttacattcaaccat |
24524220 |
T |
|
| Q |
843 |
tcaggatattgaaacggacaagatctcgcttgagattttgtcttctaagttctgttagatgcatgcttcaacatggtttatttatgcattt |
933 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | |||||||| |||| |||| |
|
|
| T |
24524219 |
tcaggatattgaaacggacaagatctcgcttgagattttgtcttctaatttctgttagatgaatgcttcagcgtggtttatatatggattt |
24524129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 53 - 411
Target Start/End: Complemental strand, 24524885 - 24524526
Alignment:
| Q |
53 |
tttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatga |
152 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24524885 |
tttgtttttgcaactagaaaggttcattgctgatatcaaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatga |
24524786 |
T |
|
| Q |
153 |
aaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccct |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
24524785 |
aaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaggtgttatctttgaaatggagtcttacccgcttaaaggggagccct |
24524686 |
T |
|
| Q |
253 |
cggttattctatgaatggagttgggatccgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatgtcttttttc-tggttt |
351 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
24524685 |
tggttattctatgaatggagttgggattcgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatgtcttttttcttggttt |
24524586 |
T |
|
| Q |
352 |
tgggggctgttggaagtggttgctgctttctgtccgctgaattgttggtgctgttctgct |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24524585 |
tgggggctgttggaagtggttgctgctttctgtcggctgaattgttggtgctgttctgct |
24524526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 877 - 1297
Target Start/End: Complemental strand, 24524090 - 24523655
Alignment:
| Q |
877 |
attttgtcttctaagttctgttagatgcatgcttcaacatggtttatttatgcatttattctctattaagtatcaacaaaaaga-taagtatgcaatatt |
975 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24524090 |
attttgtcttctaagttctgttagatgcatgcttcaacatggtttatttatacatttattctctattaagtatcaacaaaaagaataagtatgcaatatt |
24523991 |
T |
|
| Q |
976 |
aaaagg--ataaaaatt-ggcacatatctat--gtatccatcttgtaaacggcagctcaaaatatatgttcatagattgtctgtggacctgtgagtacaa |
1070 |
Q |
| |
|
|||| | ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24523990 |
aaaaaggaataaaaattaggcacatatctatatgtatccatcttgtaaacggcagctcaaaatat--gttcatagattgtctgtggacctgtgagtacaa |
24523893 |
T |
|
| Q |
1071 |
acagcaaaaagggaggaaggccacgttaatgaaaggaaaaatcaaatacaaaagcaagacataaatgtacagacatgcaaaccttaaatccatgttctcc |
1170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24523892 |
acagcaaaaagggaggaaggccacgttaatgaaaggaaaaatcaaatacaaaagcaagacataaatgtacagacatgcaaaccttaaattcatgttctcc |
24523793 |
T |
|
| Q |
1171 |
a----------aggccgtgatcagaaaacatttgggccctgtttctattatacgacacgagcgga-ttttgcagccacaaccacattatgtgtctgctat |
1259 |
Q |
| |
|
| ||| |||||||||||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24523792 |
aacaggaaaggaggtcgtgatcagaaaacatttggaccctgtttctgttatacgacacgagaggatttttgcagccacaaccacattatgtgtctgctag |
24523693 |
T |
|
| Q |
1260 |
aagactaaatatagagagacaaaccttcaagttttaga |
1297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24523692 |
aagactaaatatagagagacaaaccttcaagttttaga |
24523655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 37 - 413
Target Start/End: Complemental strand, 9131047 - 9130671
Alignment:
| Q |
37 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9131047 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
9130948 |
T |
|
| Q |
137 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
9130947 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaggtgttatctttgaaatggagtcttacccg |
9130848 |
T |
|
| Q |
237 |
tttaaaggggagccctcggttattctatgaatggagttgggatccgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatg |
336 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9130847 |
cttaaaggggagcccttggttattctatgaatggagttgggattcgggagaatgattgaagaggagtctagctgcagcagatcagtggtccgtctggatg |
9130748 |
T |
|
| Q |
337 |
tcttttttctggttttgggggctgttggaagtggttgctgctttctgtccgctgaattgttggtgctgttctgctgc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9130747 |
tcttttttctggttttgggggctgttggaagtggttgctgctttctgtcggctgaattgttggtgctgttctgctgc |
9130671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 37 - 413
Target Start/End: Complemental strand, 9122940 - 9122575
Alignment:
| Q |
37 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9122940 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
9122841 |
T |
|
| Q |
137 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccg |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9122840 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtc-----------gatgagatcaaagtgttatctttgaaatggagtcttagccg |
9122752 |
T |
|
| Q |
237 |
tttaaaggggagccctcggttattctatgaatggagttgggatccgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatg |
336 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9122751 |
tttaaaggggagcccttggttattctatgaatggagttgagatccgggagaatgattgaagaggagtcgagctgcagcagatcagtggtccgtctggatg |
9122652 |
T |
|
| Q |
337 |
tcttttttctggttttgggggctgttggaagtggttgctgctttctgtccgctgaattgttggtgctgttctgctgc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9122651 |
tcttttttctggttttgggggctgttggaagtggttgctgctttctgtcggctgaattgttggtgctgttctgctgc |
9122575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 1182 - 1297
Target Start/End: Complemental strand, 9122501 - 9122386
Alignment:
| Q |
1182 |
cagaaaacatttgggccctgtttctattatacgacacgagcggattttgcagccacaaccacattatgtgtctgctataagactaaatatagagagacaa |
1281 |
Q |
| |
|
|||||||||||||| || ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9122501 |
cagaaaacatttggaccttgtttctgtaatacgacacgagcggattttgcagccacaaccacattatgtgtctgctagaagactaaatatagagagacaa |
9122402 |
T |
|
| Q |
1282 |
accttcaagttttaga |
1297 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9122401 |
accttcaagttttaga |
9122386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 1182 - 1297
Target Start/End: Complemental strand, 9130597 - 9130482
Alignment:
| Q |
1182 |
cagaaaacatttgggccctgtttctattatacgacacgagcggattttgcagccacaaccacattatgtgtctgctataagactaaatatagagagacaa |
1281 |
Q |
| |
|
|||||||||||||| || ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9130597 |
cagaaaacatttggaccttgtttctgtaatacgacacgagcggattttgcagccacaaccacattatgtgtctgctagaagactaaatatagagagacaa |
9130498 |
T |
|
| Q |
1282 |
accttcaagttttaga |
1297 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9130497 |
accttcaagttttaga |
9130482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 1226 - 1297
Target Start/End: Complemental strand, 9113577 - 9113506
Alignment:
| Q |
1226 |
ttttgcagccacaaccacattatgtgtctgctataagactaaatatagagagacaaaccttcaagttttaga |
1297 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9113577 |
ttttgcagccacaaccacattatgtgtctgctagaagactaaatatagagagacaaaccttcaagttttaga |
9113506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 9123068 - 9123039
Alignment:
| Q |
9 |
tattactgccaatgtctttatttgatgttt |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9123068 |
tattactgccaatgtctttatttgatgttt |
9123039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 9131175 - 9131146
Alignment:
| Q |
9 |
tattactgccaatgtctttatttgatgttt |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9131175 |
tattactgccaatgtctttatttgatgttt |
9131146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 90 - 252
Target Start/End: Complemental strand, 10323301 - 10323138
Alignment:
| Q |
90 |
aaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatg-aaaagatcgtcaagaatttggctagagattgtgagga |
188 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||| ||| |||| |||||||||||||||||| |||| |
|
|
| T |
10323301 |
aaagaggggttattggttaatttggcactccgttattttggttctttggaaggctagaaatgcgaaaaatcatcaacaatttggctagagattgtaagga |
10323202 |
T |
|
| Q |
189 |
tattgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccct |
252 |
Q |
| |
|
|||||||||||| ||||| |||| || | | |||| |||||| ||| |||||||||||||||| |
|
|
| T |
10323201 |
tattgtggatgaaatcaagatgttgtcatggtaatgaagtctttgccatttaaaggggagccct |
10323138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 10323126 - 10323079
Alignment:
| Q |
298 |
aggagtccagctgcagcagatcagtggtccgtctggatgtcttttttc |
345 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
10323126 |
aggagtccagctgaagcagataagtggtccgtctggatgtcatttttc |
10323079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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