View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_10 (Length: 523)
Name: NF3856_low_10
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 14 - 505
Target Start/End: Complemental strand, 33793622 - 33793131
Alignment:
| Q |
14 |
cagagatgatatagatcattcttgtggccttggaaattatatcttttggattgtaccaattggtggtggcttgtgaatctaatggtatgaaggatatgca |
113 |
Q |
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| T |
33793622 |
cagagatgatatagatcattcttgtggccttggaaattatatcttttggattgtaccaattggtggtggcttgtgaatctaatggtatgaagaatatgca |
33793523 |
T |
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| Q |
114 |
gacttaataatagagacgtgagtttactcgtagaggaagagagact--atacttcttaatgacggcaagataaaataggaagctaaaacattgatcctaa |
211 |
Q |
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| T |
33793522 |
gacttaataatagagacgtgagtttactcgtagaggaagagagactgtatacttcttaatgacggcaagataaaataggaagctaaaacattgatcctaa |
33793423 |
T |
|
| Q |
212 |
ttgattaagaaccaattcctggtaattgaataagattcaatgaatttcttgcggcgatagagcataacacaatttcaactaagaggggaagaattaaaga |
311 |
Q |
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| T |
33793422 |
ttgattaagaaccaattcctggtaattgaataagattcaatgaatttcttgcggcgatagagcataacacaatttcaactaagaggggaagaattaaaga |
33793323 |
T |
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| Q |
312 |
atattcattcttttggttttatagaggaattagtttgaatgacattccatgagagaagaagacgtgaagtagaccatgtactaacataatttagaataag |
411 |
Q |
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| T |
33793322 |
atattcattcttttggttttatagaggaattagtttgaatgacattccatgagagaagaagacgtgaagtaggccatgtactaacataatttagaataag |
33793223 |
T |
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| Q |
412 |
aggcatt-------atttgtatagctacatccatgacaatcacgtgattcacgtccctcataagtgagtggaaaactgctccatatatttagcatgtaac |
504 |
Q |
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| T |
33793222 |
aggcattaatatacatttgtatagctacatccatgacaa---------tcacgtccctaataagtgagtggaaaactgctccatatatttagcatgtaac |
33793132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 8311589 - 8311715
Alignment:
| Q |
12 |
agcagagatgatatagatcattcttgtggccttggaaattatatcttttggattgtaccaattggtggtggcttgtgaatctaatggtatgaaggatatg |
111 |
Q |
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||||||||||||| |||| |||||||||||||| ||||| ||| | ||||||| ||| |||||||||| ||| ||||||||| ||||||||||| ||||| |
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| T |
8311589 |
agcagagatgataaagattattcttgtggccttagaaataataccctttggatggtagcaattggtggaggcgtgtgaatctgatggtatgaagaatatg |
8311688 |
T |
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| Q |
112 |
cagacttaataatagagacgtgagttt |
138 |
Q |
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| T |
8311689 |
cagacttaatgatagaggcgtgagttt |
8311715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 505
Target Start/End: Original strand, 8311924 - 8311966
Alignment:
| Q |
463 |
cataagtgagtggaaaactgctccatatatttagcatgtaacc |
505 |
Q |
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| T |
8311924 |
cataagtgagtggaaaactgctccttgtatttagcaagtaacc |
8311966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Complemental strand, 26251078 - 26251039
Alignment:
| Q |
465 |
taagtgagtggaaaactgctccatatatttagcatgtaac |
504 |
Q |
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| T |
26251078 |
taagtgagtggaaaactgctccttatatttagcaagtaac |
26251039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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