View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_11 (Length: 509)
Name: NF3856_low_11
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 13 - 491
Target Start/End: Complemental strand, 24863193 - 24862713
Alignment:
| Q |
13 |
aatattgtggcatgaatccgcgtattgtctagaatggcttatcaaatttttgaaacaaaattacaactttgtggctgcattgttggctatacttagtatt |
112 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
24863193 |
aatattgtggcatgaatccacgtattgtctagaatggcttatcaaatttttgaaacaaaattacaactttgttgctgcattgctggctatacttagtatt |
24863094 |
T |
|
| Q |
113 |
gtgaagacggtacttgcagtcctagcctatattttgcataagtaaatttgtctccattttacggaatatttattttatgtatgtttcctgtccttctgtt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24863093 |
gtgaagacggtacttgcagtcctagcctatattttgaataagtaaatttgtctccattttacggaatatttatttcatgtatgtttcctgtccttctgtt |
24862994 |
T |
|
| Q |
213 |
tgtaatgggaattcatttgggtgtttgttaggatttaaaatgcaagtcaatttatttttcttgtgtgacatttaatgtatgagttcgattttgttattcc |
312 |
Q |
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| T |
24862993 |
tgtaatgggaattcatttgggtgtttgttaggatttaaaatgcaagtcaatttatttttcttgtgtgacatttaatgtatgagttcgattttgttattcc |
24862894 |
T |
|
| Q |
313 |
aagtggccgtgcaaattcc--atcataaaagatcgttagtatcaccattacaaaacaggtatgctatttctattccataattttttgttgttgataattt |
410 |
Q |
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| T |
24862893 |
aagtggccgtgcaaattccaaatcataaaagatcgttagtatcaccattacaaaataggtatgctatttctatttcataattttttgttgttgataattt |
24862794 |
T |
|
| Q |
411 |
acggttttaataaagtgcatcgtaggttccgccaccattttttcatcattaattttattataactggcgttctgacgaaca |
491 |
Q |
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| T |
24862793 |
acggttttaataaagtgcatcgtaggttccgccaccattttttcatcattaattttattataactgccattctgacgaaca |
24862713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 189 - 494
Target Start/End: Original strand, 24874923 - 24875229
Alignment:
| Q |
189 |
atgtatgtttcctgtccttctgtttgtaatgggaattcatttgggtgtttgttaggatttaaaatgcaagtcaatttatttttcttgtgtgacatttaat |
288 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24874923 |
atgtatgtttcttgtccttctgtttgtaatgggaattcatttgggtgtttgttaggatttaaaatgcaagtcaatttatttttcttgtgtgacatttaat |
24875022 |
T |
|
| Q |
289 |
gtatgagttcgattttgttattccaagtggccgtgcaaattccatcataaaagatcgttagtatcaccattacaaaacaggtatgctatttctattccat |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24875023 |
gtatgagttcgattttgttattccaagtggccgtgcaaattccatcataaaagatcgtaagtatcaccattacaaaacaggtatgctatttctatttcat |
24875122 |
T |
|
| Q |
389 |
aattttttgttgttgataatttacggttttaataaagtgcatcgtaggttccgccaccattttttcatcattaattttattat-aactggcgttctgacg |
487 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
24875123 |
aattttttgttgttgataatttacggttttaataaagtgtatcgtaggttccgccaccattttttcatcattaattttattataaaacggcgttctgacg |
24875222 |
T |
|
| Q |
488 |
aacaaac |
494 |
Q |
| |
|
||||||| |
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|
| T |
24875223 |
aacaaac |
24875229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 24834344 - 24834239
Alignment:
| Q |
37 |
ttgtctagaatggcttatcaaatttttgaaacaaaattacaactttgtggctgcattgttggctatacttagtattgtgaagacggtacttgcagtccta |
136 |
Q |
| |
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|||||||||| |||||||||| ||||||||| || ||||||||||||| |||||| || | ||| |||||||| ||||| |||| || |||| ||||| |
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| T |
24834344 |
ttgtctagaacggcttatcaagtttttgaaagaagattacaactttgttgctgcactgcttgctctacttagtgttgtgcagactgtttatgcactccta |
24834245 |
T |
|
| Q |
137 |
gcctat |
142 |
Q |
| |
|
|||||| |
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|
| T |
24834244 |
gcctat |
24834239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 183 - 279
Target Start/End: Complemental strand, 24834207 - 24834106
Alignment:
| Q |
183 |
tattttatgtatgtttcctgtccttctgtttgtaatgggaattcatttgggtgt--ttgtt---aggatttaaaatgcaagtcaatttatttttcttgtg |
277 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| | | | ||||||||||||||| |||| |||| |||||||||||||||||| |||||||||||| |
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| T |
24834207 |
tatttcatgtatgtttcttgtccttctgtttggagtagcaattcatttgggtgtgtttgtgtagaggaattaaaatgcaagtcaattgatttttcttgtg |
24834108 |
T |
|
| Q |
278 |
tg |
279 |
Q |
| |
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|| |
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|
| T |
24834107 |
tg |
24834106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 24874874 - 24874921
Alignment:
| Q |
171 |
ttacggaatatttattttatgtatgtttcctgtccttctgtttgtaat |
218 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
24874874 |
ttacgaaatatttatttcatgtatgtttcctgtccttctgtttgtaat |
24874921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 24900286 - 24900366
Alignment:
| Q |
40 |
tctagaatggcttatcaaatttttgaaacaaaattacaactttgtggctgcattgttggctatacttagtattgtgaagac |
120 |
Q |
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|||||||||| || | || |||||||||||||| ||||||||||| |||||| || | ||| |||||||| ||||| |||| |
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| T |
24900286 |
tctagaatgggttgtaaactttttgaaacaaaactacaactttgtagctgcactggttgctctacttagtgttgtgcagac |
24900366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 24754573 - 24754522
Alignment:
| Q |
39 |
gtctagaatggcttatcaaatttttgaaacaaaattacaactttgtggctgc |
90 |
Q |
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||||||||||||| |||| |||||||||||||| ||||||||||| ||||| |
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| T |
24754573 |
gtctagaatggctcttcaagtttttgaaacaaaactacaactttgttgctgc |
24754522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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