View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3856_low_14 (Length: 476)

Name: NF3856_low_14
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3856_low_14
NF3856_low_14
[»] chr6 (3 HSPs)
chr6 (132-468)||(34860600-34860936)
chr6 (20-108)||(34860496-34860584)
chr6 (171-308)||(19745640-19745778)
[»] chr2 (2 HSPs)
chr2 (22-108)||(2242506-2242594)
chr2 (149-223)||(2242244-2242318)
[»] chr7 (1 HSPs)
chr7 (269-308)||(24023073-24023112)
[»] chr8 (1 HSPs)
chr8 (63-102)||(5757387-5757427)
[»] chr3 (1 HSPs)
chr3 (347-395)||(36341389-36341437)


Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 132 - 468
Target Start/End: Original strand, 34860600 - 34860936
Alignment:
Q  132 tcaacttacacatataagcttcatcatgtatttccctgcaccctaaatctataatccactttcaaacaaaaatattatcatttttgagtcaaacaagtgc 231  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34860600 tcaacttacacatataagcttcatcatgtatttccctgcaggctaaatctataatccactttcaaacaaaaatattatcatttttgagtcaaacaagtgc 34860699  T
Q  232 acaacaatttgaataagctaaaatataagttcacatgtcatatatgaacttcaacataactaaagatccaaatcatatatcaaaataaaaacaaaattat 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34860700 acaacaatttgaataagctaaaatataagttcacatgtcatatatgaacttcaacataactaaagatccaaatcatatatcaaaataaaaacaaaattat 34860799  T
Q  332 tagaattttttagtcaaacaagtgagcaacaattttcatatgctaatatataggttcatatgtcgtatatcaacttcaaaactactaaagatccaagtca 431  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34860800 tagaattttttagtcaaacaagtgagcaacaattttcataagctaatatataggttcatatgtcgtatatcaacttcaaaactactaaagatccaagtca 34860899  T
Q  432 aggtgaagataacaaattcctacttctttcctatgct 468  Q
    ||||||||||||| |||||||||||||||||||||||    
T  34860900 aggtgaagataacgaattcctacttctttcctatgct 34860936  T

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Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 34860496 - 34860584
Alignment:
Q  20 cgagaaaaattccaaataccactctttgaagtctgctttttcagagaagtggtaaaaagatttgttgtatttaagtagggagatcaatt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34860496 cgagaaaaattccaaataccactctttgaagtctgctttttcagagaagtggtaaaaagatttgttgtatttgagtagggagatcaatt 34860584  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 308
Target Start/End: Original strand, 19745640 - 19745778
Alignment:
Q  171 accctaaatctataatccactttcaaa-caaaaatattatcatttttgagtcaaacaagtgcacaacaatttgaataagctaaaatataagttcacatgt 269  Q
    ||||||||||||| |||| |||| ||| | | || |||||||||| ||| ||||||||||  ||||| ||||| |||||   | ||||||||| | || |    
T  19745640 accctaaatctatcatcctcttttaaaactacaacattatcatttatgaatcaaacaagtaaacaaccatttgcataagacgatatataagttaatatat 19745739  T
Q  270 catatatgaacttcaacataactaaagatccaaatcata 308  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  19745740 catatataaacttcaacataactaaatatccaaatcata 19745778  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 2242594 - 2242506
Alignment:
Q  22 agaaaaattccaaataccactctttgaagt--ctgctttttcagagaagtggtaaaaagatttgttgtatttaagtagggagatcaatt 108  Q
    |||||| || || ||||||||||||||| |  ||||||| | ||||||||||| |||||||| ||||||||| |||| |||||||||||    
T  2242594 agaaaacttgcacataccactctttgaattatctgctttgttagagaagtggtcaaaagattagttgtatttgagtaaggagatcaatt 2242506  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 2242318 - 2242244
Alignment:
Q  149 gcttcatcatgtatttccctgcaccctaaatctataatccactttcaaacaaaaatattatcatttttgagtcaa 223  Q
    ||||||||||||||||   | || ||||||||||| |||| |||  ||||||||||||||  |||||||||||||    
T  2242318 gcttcatcatgtatttgtatccatcctaaatctatgatcctcttcaaaacaaaaatattagaatttttgagtcaa 2242244  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 24023112 - 24023073
Alignment:
Q  269 tcatatatgaacttcaacataactaaagatccaaatcata 308  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  24023112 tcatatatgaacttcaacataaataaagatccaagtcata 24023073  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 5757387 - 5757427
Alignment:
Q  63 gagaagtggtaaaa-agatttgttgtatttaagtagggaga 102  Q
    |||||||||||||| ||||||||||||||| ||||||||||    
T  5757387 gagaagtggtaaaaaagatttgttgtatttgagtagggaga 5757427  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 36341437 - 36341389
Alignment:
Q  347 aaacaagtgagcaacaattttcatatgctaatatataggttcatatgtc 395  Q
    |||||||||| ||||||||| |||| ||||||| ||| |||||||||||    
T  36341437 aaacaagtgaacaacaatttacataagctaatacataagttcatatgtc 36341389  T

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