View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_16 (Length: 472)
Name: NF3856_low_16
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 3 - 455
Target Start/End: Original strand, 38846004 - 38846456
Alignment:
| Q |
3 |
tatatcttcaacatcaagacttgaaaaacatccttccgatgatcaagagttactcatatgactctcaaatcattaagatcacaacggctctactggttag |
102 |
Q |
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| T |
38846004 |
tatatcttcaacatcaagacttgaaaaacatccttccgatgatcaagagttactcatatgactctcaaatcattaagatcacaacggctctactagttag |
38846103 |
T |
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| Q |
103 |
catttttctatttacaattatggctagaatgttttacatttcatttcattcatgtaataaaatgatttggcctatacaaaagttttaatattgaaaatat |
202 |
Q |
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| T |
38846104 |
catttttctatttacaattatggctagaatgttttacatttcatttcattcatgtaataaaatgatttggcctataaaaaagttttaatattgaaaatat |
38846203 |
T |
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| Q |
203 |
ttctatcaaagtcaccgataaggacatgcacttcaaatttaaataatatacagcaatccctttattcttatctcaaactttaccaagaatctctcagttg |
302 |
Q |
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| T |
38846204 |
ttctatcaaagtcaccgataaggacatgcacttcaaatttaaataatatacagcaatccctttattcttatctcaaactttaccaagaatctctcagttg |
38846303 |
T |
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| Q |
303 |
gattataatttacataaaatcacttgatttgaaatctataaaattaaaaattttgaaggcatttttatatcatcggttcaaataattactttctgcacaa |
402 |
Q |
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| T |
38846304 |
gattataatttacataaaatcacttgatttgaaatctataaaattaaaaattttgaaggcatttttttatcatcggttcaaataattactttctgcacaa |
38846403 |
T |
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| Q |
403 |
tgttgttgaaaaataattgtactcataattttaactcatgtatatttactttt |
455 |
Q |
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| T |
38846404 |
tgttgttgaaaaataattgtacttataattttaactcatgtatatttactttt |
38846456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 271
Target Start/End: Original strand, 38826235 - 38826379
Alignment:
| Q |
125 |
gctagaatgttttacatttcatttcattcatgtaataaaatgatttggcctatacaaaagttttaatattgaaaatatttctatcaaagtcaccgataag |
224 |
Q |
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| T |
38826235 |
gctagaatgttttacgtttcacttaattcaagcaataaaatgatttttcctacacaaaagagataatattaaaaatatt---atctaagtaattgataat |
38826331 |
T |
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| Q |
225 |
gacatgcacttcaaatttaaataata-tacagcaatccctttattctt |
271 |
Q |
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| T |
38826332 |
gacgcgcactttaaatttaaataatattaaataaatccctttattctt |
38826379 |
T |
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