View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3856_low_17 (Length: 467)
Name: NF3856_low_17
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 38720009 - 38720460
Alignment:
| Q |
1 |
tcaaattaactaacatgatattgtgttatttaatgaaggtggtctaaaatagcggaacaattaccgggaagaaccgacaatgaaataaagaactattgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38720009 |
tcaaattaactaacatgatattgtgttatttaatgaaggtggtctaaaatagcggaacaattaccgggaagaaccgacaatgaaataaagaactattgga |
38720108 |
T |
|
| Q |
101 |
gaacaagagtggtgaagcaagctaggcaactaaaatgtgatgtaaccagtcaacagtttagggacacattgcgttacgtatggattccacgtcttattga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38720109 |
gaacaagagtggtgaagcaagctaggcaactaaaatgtgatgtaaacagtcaacagtttagggacacattgcgttacgtatggattccacgtcttatcga |
38720208 |
T |
|
| Q |
201 |
gagaatccaatcttctagtgcaactgcagatactaattcctatagccacggacaaatcaccacttgcaacaatactaaagctcatagtgaaacttgtggg |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38720209 |
gagaatccaatcttctggtgcaactgcagatactaattcctatagccacggacaaatcaccacttgcaaaaatactaaagctcatagtgaaacttgtggg |
38720308 |
T |
|
| Q |
301 |
gcaaatgcaaatcctccaatgttgcagtctgaggtttcatcgtactcgtcaggggttgaagttcaaatagaatcaaacgtatcttacaatttaatggatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38720309 |
gcaaatgcaaatcctccaatgttgcagtctgaggtttcatcgtactcgtcaggggttgaagttcaagtagaatcaaacgtatcttacaatttaatggatt |
38720408 |
T |
|
| Q |
401 |
gtgcagaactgggatccacgtggcaggactggaactgtttagactcaaacat |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38720409 |
gtgcagaactgggatccacgtggcaggactggaactgtttagactcaaacat |
38720460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 38707180 - 38707301
Alignment:
| Q |
37 |
aggtggtctaaaatagcggaacaattaccgggaagaaccgacaatgaaataaagaactattggagaacaagagtggtgaagcaagctaggcaactaaaat |
136 |
Q |
| |
|
|||||||| ||||| || |||| |||| || ||||| |||||||||||||| ||||||||||||||||||||| | || ||||| | |||||| |||| |
|
|
| T |
38707180 |
aggtggtcgaaaattgcacaacatctaccaggtagaacggacaatgaaataaaaaactattggagaacaagagtgatcaaacaagcaaagcaactcaaat |
38707279 |
T |
|
| Q |
137 |
gtgatgtaaccagtcaacagtt |
158 |
Q |
| |
|
||||||||| ||| ||||||| |
|
|
| T |
38707280 |
gtgatgtaaacagcaaacagtt |
38707301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 49848602 - 49848556
Alignment:
| Q |
61 |
ttaccgggaagaaccgacaatgaaataaagaactattggagaacaag |
107 |
Q |
| |
|
||||| |||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
49848602 |
ttaccaggaagaacagataatgagataaagaactattggagaacaag |
49848556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 27632614 - 27632577
Alignment:
| Q |
67 |
ggaagaaccgacaatgaaataaagaactattggagaac |
104 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
27632614 |
ggaagaacagacaatgaaatcaagaactattggagaac |
27632577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 32447534 - 32447497
Alignment:
| Q |
64 |
ccgggaagaaccgacaatgaaataaagaactattggag |
101 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
32447534 |
ccgggaagaacagacaatgagataaagaactattggag |
32447497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 41830858 - 41830792
Alignment:
| Q |
34 |
tgaaggtggtctaaaatagcggaacaattaccgggaagaaccgacaatgaaataaagaactattgga |
100 |
Q |
| |
|
||||| |||||| ||||||| | || |||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
41830858 |
tgaagatggtctcaaatagcagcacgattaccgggaagaaccgacaatgaaataaaaaacttttgga |
41830792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 37881369 - 37881329
Alignment:
| Q |
60 |
attaccgggaagaaccgacaatgaaataaagaactattgga |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
37881369 |
attacccggaagaacagacaatgaaataaagaactactgga |
37881329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 13297776 - 13297851
Alignment:
| Q |
32 |
aatgaaggtggtctaaaatagcggaacaattaccgggaagaaccgacaatgaaataaagaactattggagaacaag |
107 |
Q |
| |
|
|||| |||||||| ||||| ||| |||| |||||||||||||||| ||||| ||||||||||| ||||| ||||| |
|
|
| T |
13297776 |
aatgcaggtggtcgaaaattgcgaaacatctaccgggaagaaccgataatgagataaagaactactggaggacaag |
13297851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 50777564 - 50777500
Alignment:
| Q |
40 |
tggtctaaaatagcggaacaattaccgggaagaaccgacaatgaaataaagaactattggagaac |
104 |
Q |
| |
|
||||| |||||||| || | ||||| |||||||| |||||||||||||| || ||||||||||| |
|
|
| T |
50777564 |
tggtcgaaaatagcccaatatttaccaggaagaacggacaatgaaataaaaaattattggagaac |
50777500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University