View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3856_low_20 (Length: 457)
Name: NF3856_low_20
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 163 - 439
Target Start/End: Original strand, 14535700 - 14535976
Alignment:
| Q |
163 |
ctcaccttttccattctttcgaaaaatcccattttggtcttagtttttgttcctgtgtggcagtctgccaccaattcttgtccagatttcgattctattc |
262 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14535700 |
ctcaccttttccattctttcaaaaaatcccattttggtcttagtttttgttcctgtgtggcagtctgccaccaattcttgtccagatttcgattctattc |
14535799 |
T |
|
| Q |
263 |
tcctccttgtaatctccaagaacgaagccacagctggaacgggctctcttatcggctgcacaatgcaaatgtcaccaattcctgctgcagacaacttccc |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14535800 |
tcctccttgtaatctccaagaacgaagccacagctggaacgggctcgcttatcggctgcacaatgcaaatgtcaccaattcctgctgcagacaacttccc |
14535899 |
T |
|
| Q |
363 |
ctcatttggcccttgtaaccaggacaggataaaggtacacaagcactctgcgtcttttgtccgagaatgattgtgtt |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14535900 |
ctcatttggcccttgtaaccaggacaggataaaggtacacaagcactctgcgtcttttgtccgagaatgattgtgtt |
14535976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 439
Target Start/End: Original strand, 14518049 - 14518471
Alignment:
| Q |
11 |
cacagatcgtttggcgcgttgttttccctggagaggaatatatgatgtcaaacacacnnnnnnnncatccaaaaattttatactattaatacaaatttct |
110 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14518049 |
cacagatcgtcttgcgcgttgttttccctggagaggaatgtatgatgtcaaacaca---aaaagacatccaaaaatcttatactattaatacaaatttct |
14518145 |
T |
|
| Q |
111 |
caccnnnnnnnctaattgaatgtactttgcgaatataaagatgcatacactactcaccttttccattctttcgaaaaatcccattttggtcttagttttt |
210 |
Q |
| |
|
|| | |||| ||| |||||||||||||||||||| |||||||| || |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14518146 |
caacaaaaaaactaaaggaaactactttgcgaatataaagatacatacact---catcttttccattctttcgaagaatcccattttggtcttagttttt |
14518242 |
T |
|
| Q |
211 |
gttcctgtgtggcagtctgccaccaattcttgtccagatttcgattctattctcctccttgtaatctccaagaacgaagccacagctggaacgggctctc |
310 |
Q |
| |
|
|||||| ||| ||||| |||||||| ||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||| ||||| |||| |||||| |
|
|
| T |
14518243 |
gttcctttgttgcagtgcgccaccaactcttgtctagagttcgattctattctcctccttgaaatctgcaagaacgaagccaaagctgcaacgtgctctc |
14518342 |
T |
|
| Q |
311 |
ttatcggctgcacaatgcaaatgtcaccaattcctgctgcagacaacttcccctcatttggcccttgtaaccaggacaggataaaggtacacaagcactc |
410 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| |||||||||| |
|
|
| T |
14518343 |
ttattggctgcacaatgcaaatgtcaccaattcttgctgcagacaacttcccctcatttggcccttgtagccaggataggttaaaggtgcacaagcactt |
14518442 |
T |
|
| Q |
411 |
tgcgtcttttgtccgagaatgattgtgtt |
439 |
Q |
| |
|
| |||||||| || ||||||||||||||| |
|
|
| T |
14518443 |
ttcgtcttttttctgagaatgattgtgtt |
14518471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 14531101 - 14531272
Alignment:
| Q |
11 |
cacagatcgtttggcgcgttgttttccctggagaggaatatatgatgtcaaacacacnnnnnnnncatccaaaaattttatactattaatacaaatttct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14531101 |
cacagatcgtttggcgcgttgttttccctggagaggaatatatgatgtcaaacacacaaaaaaaacatccaaaaattttatactattaatacaaatttct |
14531200 |
T |
|
| Q |
111 |
caccnnnnnnnctaattgaatgtactttgcgaatataaagatgcatacactactcaccttttccattctttc |
182 |
Q |
| |
|
|| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14531201 |
caacaaaaaaactaattgaatgtactttgcgaatctaaagatgcatacactactcaccttttccattctttc |
14531272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 14535608 - 14535697
Alignment:
| Q |
11 |
cacagatcgtttggcgcgttgttttccctggagaggaatatatgatgtcaaacacacnnnnnnnncatccaaaaattttatactattaatac |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
14535608 |
cacagatcgtttggcgcgttgttttccctgaagaggaatatatgatgtcaaacacac--aaaaaacatccaaaaatcttatactattaatac |
14535697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 7e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 12 - 431
Target Start/End: Complemental strand, 37338382 - 37337959
Alignment:
| Q |
12 |
acagatcgtttggcgcgttgttttccctggagaggaatatatgatgtcaaacacacnnnnnnnncatccaaaaattttatactattaatacaaatttctc |
111 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||| ||||||||||| ||||||||| | ||||||||| || |
|
|
| T |
37338382 |
acagatcgtttggcgcgtcgttttccctggagaagaatataagatatcaaacaca---gaaatacatccaaaaatcttatactataactacaaatttttc |
37338286 |
T |
|
| Q |
112 |
accnnnnnnnctaattgaatgtactttgcgaatataaagatgcat-------acactactcaccttttccattctttcgaaaaatcccattttggtctta |
204 |
Q |
| |
|
| | ||| ||| |||||||| ||| |||||||| ||| |||||||||||||||| |||||||||||| |||||||||||||| ||| |
|
|
| T |
37338285 |
aacatgcaaaataacggaaagtactttgggaacataaagatacattttacacacactactcaccttttgcattctttcgaagaatcccattttggtttta |
37338186 |
T |
|
| Q |
205 |
gtttttgttcctgtgtggcagtctgccaccaattcttgtccagatttcgattctattctcctccttgtaatctccaagaacgaagccacagctggaacgg |
304 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||| |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
37338185 |
gtttttgttcctttatggcagttcaccaccaattcctgtccagattgtgattctagtctcctccttgtaatctccaagaaaaaagccacagctggatcat |
37338086 |
T |
|
| Q |
305 |
gctctcttatcggctgcacaatgcaaatgtcaccaattcctgctgcagacaacttcccctcatttggcccttgtaaccaggacaggataaaggtacacaa |
404 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||| | || |||| |||||| || ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37338085 |
gctcttttataggctgcacaatgcaaatgtcaccaatttcggcagcagtcaactttccttcatttggcccatgtaaccaggacaggataaaggtacacaa |
37337986 |
T |
|
| Q |
405 |
gcactctgcgtcttttgtccgagaatg |
431 |
Q |
| |
|
|||||| ||||||||| | |||||||| |
|
|
| T |
37337985 |
gcactccgcgtcttttttgcgagaatg |
37337959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 212 - 300
Target Start/End: Complemental strand, 37327529 - 37327441
Alignment:
| Q |
212 |
ttcctgtgtggcagtctgccaccaattcttgtccagatttcgattctattctcctccttgtaatctccaagaacgaagccacagctgga |
300 |
Q |
| |
|
||||||||| ||||| |||||| ||| |||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
37327529 |
ttcctgtgttgcagtacaccaccatttcctgtccagattgtgattctattctcctccttgtaatctctaagaatgaagccacagctgga |
37327441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 37327620 - 37327556
Alignment:
| Q |
145 |
ataaagatgcatacactactcaccttttccattctttcgaaaaatcccattttggtcttagtttt |
209 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||| ||| ||| | ||||||||| |||||||||| |
|
|
| T |
37327620 |
ataaagatacacacactactcaccttttgcattcgttcaaaataacccattttgctcttagtttt |
37327556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 431
Target Start/End: Complemental strand, 37327349 - 37327310
Alignment:
| Q |
392 |
taaaggtacacaagcactctgcgtcttttgtccgagaatg |
431 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
37327349 |
taaaggtacacaagcactctgcgtcttttttgcgagaatg |
37327310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University