View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_22 (Length: 437)
Name: NF3856_low_22
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 47123037 - 47122612
Alignment:
| Q |
1 |
ttgaattgggtcacattatagagattgattgcaaacaagtagtagacgatgttcacaacatcaaatctgacttatctgagtatggttctatcatttcatt |
100 |
Q |
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| T |
47123037 |
ttgaattgggtcacattatagagatggattgcaaacaagtagtagacgatgttcacaacatcaaatctgacttatctgagtatggttctatcatttcatt |
47122938 |
T |
|
| Q |
101 |
atgttgggaccttttatctttnnnnnnncaactatactattgtgtttactaggagagaagcaaaatgatactgcttatgctcttacaaaaaacattgcca |
200 |
Q |
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| T |
47122937 |
atgttgggaccttttatctttaaaaaaacaactataatattgtgtttactaggagagaagcaaaatgatactgcttatgctcttacaaaaa-cattgcca |
47122839 |
T |
|
| Q |
201 |
attatactattcacaatgttcttacgtctattcctcattgtatttggacatttttattgaatgaaatgtcttgattttgcttgtgtaaaagaaaggtgaa |
300 |
Q |
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| T |
47122838 |
attatactattcacaatgttcttacgtctattcctcattgtatttggacatttttattgaatgaaatgtcttgattttgcttgtgtaaaagaaaggtgaa |
47122739 |
T |
|
| Q |
301 |
aacgaaacatatgttaacttgaagctagaacgttcatacataaaaaagacgaaattagaatttgaaacttgcatgtgcaattaatagtcttaaataagtt |
400 |
Q |
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| T |
47122738 |
aacgaaacatatgttaacttgaagctagaacgttcatacataaaaaagacgaaattagaatttgaaacttgcatgtgcaattaatagtcttaaataagtt |
47122639 |
T |
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| Q |
401 |
tcaaacctatgattttatttccctatg |
427 |
Q |
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| T |
47122638 |
tcaaacttatgattttatttccctatg |
47122612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 42888679 - 42888723
Alignment:
| Q |
235 |
tcattgtatttggacatttttattgaatgaaatgtcttgattttg |
279 |
Q |
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| T |
42888679 |
tcattgtatttggaacattttattgaatgaattgtcttgattttg |
42888723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 32185727 - 32185687
Alignment:
| Q |
238 |
ttgtatttggacatttttattgaatgaaatgtcttgatttt |
278 |
Q |
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| T |
32185727 |
ttgtatttggacaattttattaaatgaaatgccttgatttt |
32185687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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