View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_24 (Length: 430)
Name: NF3856_low_24
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 32098489 - 32098901
Alignment:
| Q |
18 |
gtctccacttgtctagtgttagtgttgtgtccattgtccctgttggtgcttcatacattaagagacttaaacagtcttaacatcaacatacccttgcaat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32098489 |
gtctccacttgtctagtgttagtgttgtgtccattgtccctgttggtgcttcatacattaagagacttaaacagtcttaacatcaacatacccttacaat |
32098588 |
T |
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| Q |
118 |
taagtgatcaacgtatcaaacatgtttatcatttctaaagaccaaactcgtgcaaacatgatggaataacaaaacatagaaacccgaaagtttcttacca |
217 |
Q |
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| T |
32098589 |
taagtgatcaacgtatcaaccatgtttatcatttctaaagaccaaactcttgcaaacatgatggaataacaaaacatagaaacccgaaagtttcttacca |
32098688 |
T |
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| Q |
218 |
aagtatcaatctcaccatgtccctgctcttaggccatgaaactggaactttataccctttgggaagaggcaacaaacaatgaggagtagatttaggacaa |
317 |
Q |
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| T |
32098689 |
aagtatcaatctcaccatgtccctgctcttaggccatgaaaccggaactttataccctttgggaagaggcaacaaacaatgaggagtagatttaggacaa |
32098788 |
T |
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| Q |
318 |
tgtctttccctatgccccatgtgcctccttcttttcaaagccttaatagccttaagattatccaagcatggtatataatctaccgctaaaacacctttac |
417 |
Q |
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| T |
32098789 |
tgtctttccctatgctccatgtgcctccttcttttcaaagccttaatagccttaagattatccaagcatggtatataatctaccgctaaaacacctttac |
32098888 |
T |
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| Q |
418 |
aaagcttccaatc |
430 |
Q |
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| T |
32098889 |
aaagcttccaatc |
32098901 |
T |
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Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 210 - 402
Target Start/End: Complemental strand, 35879055 - 35878863
Alignment:
| Q |
210 |
tcttaccaaagtatcaatctcaccatgtccctgctcttaggccatgaaactggaactttataccctttgggaagaggcaacaaacaatgaggagtagatt |
309 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| | | ||| | |
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| T |
35879055 |
tcttaccaaagaatcaatctcaccatgtccctactcttaggccaatgaactggaactttataccctttaggaagaggcaacaaacagttcaaactagtat |
35878956 |
T |
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| Q |
310 |
taggacaatgtctttccctatgccccatgtgcctccttcttttcaaagccttaatagccttaagattatccaagcatggtatataatctaccg |
402 |
Q |
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| T |
35878955 |
caggacaatgtctttctctatgttccatatgcctccttgatttcaaagcttgaatagctttataattatccaaacatggtatataatcaaccg |
35878863 |
T |
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