View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_28 (Length: 403)
Name: NF3856_low_28
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_28 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 403
Target Start/End: Complemental strand, 34701574 - 34701182
Alignment:
| Q |
11 |
cagagaatgttataggtgacttgaaacttactcaaaaacatgggccagtagtcgagcacgtgagtgagatatttgttcggtatacgaggaaggaaaggga |
110 |
Q |
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| T |
34701574 |
cagagaatgttataggtgacttgaaacttactcaaaaacatgggccagtagtcgagcacgtgagtgagatatttgttcggtatacgaggaaggaaaggga |
34701475 |
T |
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| Q |
111 |
cccaaaatgagaagttaaatgcgtttaagcaacaacatcatataactcaaacattggttccctctcatgaatcccatttatggttcgttacgctaaaatc |
210 |
Q |
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| T |
34701474 |
cccaaaatgagaagttaaatgcgtttaagcaacaacatcatataactcaaacattggttccctctcatgaatcccatttatggttcgttacgctaaaatc |
34701375 |
T |
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| Q |
211 |
tcgcaaatcccaattagttatcatatgtaccactgtagtttaaagagcatattcaggaatgagaatgacatgaatttacgttacttgaagtcgacacaat |
310 |
Q |
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| T |
34701374 |
tcgcaaatcccaattagttatcatatgtaccactgtagtttaaagagcatattcaggaatgagaatgacatgaatttacgttacttgaagtcgacacaat |
34701275 |
T |
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| Q |
311 |
gttttattaatataacctttgtgtgtttcgtaacttttaaatttgtaatcatcgcaatcactatagcttaattattctcacgggttctttcct |
403 |
Q |
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| T |
34701274 |
gttttattaatataacctttgtgtgtttcgtaacttttaaatttgtaatcatcgcaatcactatagcttaattattctcacgggttctttcct |
34701182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 213 - 317
Target Start/End: Original strand, 171897 - 172002
Alignment:
| Q |
213 |
gcaaatcccaattagttatcatatgtaccactgtagtttaaagagcatattcaggaatgagaatgacatgaa-tttacgttacttgaagtcgacacaatg |
311 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| | |||| ||| |
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| T |
171897 |
gcaaaccccaattaattatcatatgtaccactgtagtttaaagagcatattcagtaatgagaatgacatgaattttacattacttgaagccaacactatg |
171996 |
T |
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| Q |
312 |
ttttat |
317 |
Q |
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|||||| |
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| T |
171997 |
ttttat |
172002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 213 - 317
Target Start/End: Complemental strand, 14645394 - 14645289
Alignment:
| Q |
213 |
gcaaatcccaattagttatcatatgtaccactgtagtttaaagagcatattcaggaatgagaatgacatgaa-tttacgttacttgaagtcgacacaatg |
311 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| | |||| ||| |
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| T |
14645394 |
gcaaaccccaattaattatcatatgtaccactgtagtttaaagagcatattcagtaatgagaatgacatgaattttacattacttgaagccaacactatg |
14645295 |
T |
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| Q |
312 |
ttttat |
317 |
Q |
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|||||| |
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| T |
14645294 |
ttttat |
14645289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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