View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_29 (Length: 403)
Name: NF3856_low_29
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 38489968 - 38490314
Alignment:
| Q |
19 |
tctccgttttagagtattcgagtttcatagctacaaagaacaagttaacgtagaaaatgttattcataacttcttattatttttcacatcaaaattatcc |
118 |
Q |
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| T |
38489968 |
tctccgttttagaatattcaagtttcatagctacaaagaacaagttaacgtagaaaatgttattcataacttcttatt---tttcacatcaaaatta-cc |
38490063 |
T |
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| Q |
119 |
cacgatgcaaaattgaagctccaccaatgctcagcgaacaaaaagatcatactcttaacacaacgttggagagggcacatgattttttatttacttccta |
218 |
Q |
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| T |
38490064 |
caggatgcaaaattgaagctccacaaatgctcagtgaacaaaaagatcatactcttaacacaacgttggagagggcacatgattttttatttacttccta |
38490163 |
T |
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| Q |
219 |
actttcaagttaaactaataccttcaattatacatatttgatttaatcgaccaactactctaagaataagattaannnnnnnatttacttctttcccatc |
318 |
Q |
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| T |
38490164 |
actttcaagttaaactaataccttcaattatacatatttgatttaatcgaccaactactctaagaataagatcaatttttttatttacttcttttccatc |
38490263 |
T |
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| Q |
319 |
atgggaaagtcactttacccaggacagctgtaggttgaaaactggtagaac |
369 |
Q |
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| T |
38490264 |
atggaaaagtccctttacccagaacagctgtaggttgaaaactggtagaac |
38490314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 39901873 - 39901915
Alignment:
| Q |
307 |
ttctttcccatcatgggaaagtcactttacccaggacagctgt |
349 |
Q |
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| T |
39901873 |
ttctttcccaccatgggaaagtcccttttcccaggacagctgt |
39901915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 369
Target Start/End: Complemental strand, 25247759 - 25247698
Alignment:
| Q |
307 |
ttctttcccatcatgggaaagtcactttacccaggacagctgtaggttgaaaactggtagaac |
369 |
Q |
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| T |
25247759 |
ttctttgccaccatgggaaagtctctttacc-aggacacctgtaggttgaaaactgatagaac |
25247698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 26316945 - 26316989
Alignment:
| Q |
305 |
acttctttcccatcatgggaaagtcactttacccaggacagctgt |
349 |
Q |
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| T |
26316945 |
acttctttcccaccatgggaaagtcccttctcccaggacagctgt |
26316989 |
T |
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