View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_3 (Length: 832)
Name: NF3856_low_3
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 707; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 52 - 816
Target Start/End: Complemental strand, 48495876 - 48495116
Alignment:
| Q |
52 |
cacatattcagattatctcagctggacttgttatagaatttgcattttagcttctaaatactgttacttcagtgggaatctatacccagatacaaaagtt |
151 |
Q |
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| T |
48495876 |
cacatattcagattatctcagctggacttgttatagaattagcattttagcttctaaatactgttacttcagtgggaatctatacccagatacaaaagtt |
48495777 |
T |
|
| Q |
152 |
ttgccatcatctaaactctttaatttacaattctatccttctttacctaatcaaataattgaatttagtcctaattttaaatttcaaatttgatgtagtc |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48495776 |
ctgccatcatctaaactctttaatttacaattctatccttctttacctaatcaaataattgaatttagtcctaattttaaatttgaaatttgatgtagtc |
48495677 |
T |
|
| Q |
252 |
ctaattaagttaagttttaaatcaaatctaattcaagtcaagaacagttctatcaatcaacatgaaatatggttagtttcaagttgcttgcttgctccac |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48495676 |
ctaattaagttaagttttaaatcaaatctaattcaagtcaagaacagttctatcaatcaacatgaaatatggttagtttcaagttgcttgct----ccac |
48495581 |
T |
|
| Q |
352 |
tccttggctgctggccacccagatgtctatgacattttaaacatttcttagttttaacgtttgaatagttttgattggagtatgaatcagttctgccagg |
451 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48495580 |
tccttggctgctggccactcagatgtctatgacattttaaacatttcttagttttaacgtttgaatagttttgattggagtatgaatcagttctgccagg |
48495481 |
T |
|
| Q |
452 |
aaaatgttccaatnnnnnnngatgaaaaatgtagttggatttggagttctcaacaatagaaatataaaatgatgatgattacctcctagtaccaaccatt |
551 |
Q |
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| T |
48495480 |
aaaatgttccaataaaaaaagatgaaaaatgtagttggatttggagttctcaacaatagaaatataaaatgatgatgattacctcctagtaccaaccatt |
48495381 |
T |
|
| Q |
552 |
acaccaaccaacaaccaccaaattccaaacttgaaatgcaagagactaatacctctcaactgtcttgttgttaggctttcatattcgcatttcctctctt |
651 |
Q |
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| T |
48495380 |
acaccaaccaacaaccaccaaattccaaacttgaaatgcaagagactaatacctctcaactgtcttgttgttaggctttcatattcgcatttcctctctt |
48495281 |
T |
|
| Q |
652 |
attcttgagttttgtaaccaccattgttcctatccttggatcacagtgatctagtctatgaatggcaaaactaagatctttggttcagatatggccatct |
751 |
Q |
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| T |
48495280 |
attcttgagttttgtaaccaccattgttcctatccttggatcacagtgatctagtctatgaatggcaaagctaagatctttggttcagatatggccatct |
48495181 |
T |
|
| Q |
752 |
tttgttaggatatgcatgctgaatctcatcttcaacttcaagaccattgcattaggagatgacac |
816 |
Q |
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| T |
48495180 |
tttgttaggatatgcatgctgaatctcatcttcaacttcaagaccattgcattaggagatgacac |
48495116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 48495947 - 48495905
Alignment:
| Q |
10 |
gacatcatcatgcaagaaaaaggaacaagagcaagtgggttgc |
52 |
Q |
| |
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| T |
48495947 |
gacatcatcatgcaagaaaaaggaacaagagcaagtgggttgc |
48495905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 39093324 - 39093252
Alignment:
| Q |
145 |
aaaagttttgccatcatctaaactctttaatttacaattctatccttctttacctaatcaaataattgaattta |
218 |
Q |
| |
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| T |
39093324 |
aaaattttagccttcatttaaactcttttatttacaattttatcatt-tttaccaaatcaaataattgaattta |
39093252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 28562076 - 28562135
Alignment:
| Q |
168 |
tctttaatttacaattctatccttctttacctaatcaaataattgaatttagtcctaatt |
227 |
Q |
| |
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| T |
28562076 |
tcttttatttacaaatttacccttctttacctaattaaataattgaattcaatcctaatt |
28562135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 43471219 - 43471291
Alignment:
| Q |
163 |
taaactctttaatttacaattctatccttctttacctaatcaaataattgaatttagtcctaattttaaattt |
235 |
Q |
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| T |
43471219 |
taaactcatttatttacaattctatacttctttatctaatcaaatatttgaatttaatcataattttaaattt |
43471291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 51781614 - 51781656
Alignment:
| Q |
190 |
ttctttacctaatcaaataattgaatttagtcctaattttaaa |
232 |
Q |
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| T |
51781614 |
ttctttacttaatcaaataattgaatttattcctaattttaaa |
51781656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 29495322 - 29495382
Alignment:
| Q |
179 |
caattctatccttctttacctaatcaaataattgaatttagtcctaattttaaatttcaaat |
240 |
Q |
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| T |
29495322 |
caattttatcattctttacctaattaaataattgaattttatcctaa-tttaaatttcaaat |
29495382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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