View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3856_low_31 (Length: 383)
Name: NF3856_low_31
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_31 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] scaffold0137 (1 HSPs) |
| |
|
| [»] scaffold0402 (1 HSPs) |
| | |
|
| [»] scaffold0522 (2 HSPs) |
| | |
|
| [»] scaffold0291 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 383
Target Start/End: Original strand, 3904499 - 3904867
Alignment:
| Q |
15 |
tttaaggaaacatgaatgggtcaacaattccaatagttgaaggtgtagagaaattggggaacaatattgatgtgaatattgtgcaaaatggagaagagag |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3904499 |
tttaaggaaacatgaatggggcaacaattccaatagttgaaggtgtagagaaattggggaacaatattgatgtgaatattgtgcaaaatggagaagagag |
3904598 |
T |
|
| Q |
115 |
tgttgttgattatataccaaacttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtatt |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3904599 |
tgttgttgattatataccacacttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtatt |
3904698 |
T |
|
| Q |
215 |
cgtcgagaatatggaaataaaagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaaacgagacc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3904699 |
cgtcgagaatatggaaataaaagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaaacgagacc |
3904798 |
T |
|
| Q |
315 |
atttgacaaaagaggggagagtggaaaccagaacgggatgtgatgcacgtatggttatttcacttgatc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3904799 |
atttgacaaaagaggggagagtggaaaccagaacgggatgtgatgcacgtatggttatttcacttgatc |
3904867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 129 - 383
Target Start/End: Complemental strand, 49573268 - 49573014
Alignment:
| Q |
129 |
taccaaacttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatgg |
228 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| || | ||| || ||||| ||||||||||||| |
|
|
| T |
49573268 |
taccacacttggaaatggagtttgagtctgaggccttcacatatgaattttataatgagtatagtaagaaatgtggttttggtatccgtcgagaatatgc |
49573169 |
T |
|
| Q |
229 |
aaataaaagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaaacgagaccatttgacaaaagag |
328 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| ||| ||||| |||||||||| ||| |||| ||||||||| || | ||||||||||| |
|
|
| T |
49573168 |
aaataaaagcaaaaaagatggagttcttacttcaagaaaatttgtgtgctccaaagagggtagacgcggtgctgacaaacgtgattacttgacaaaagat |
49573069 |
T |
|
| Q |
329 |
gggagagtggaaaccagaacgggatgtgatgcacgtatggttatttcacttgatc |
383 |
Q |
| |
|
| ||| ||||| ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
49573068 |
gctcgagcagaaactagaacatgatgtttagcacgtatggttatttcacttgatc |
49573014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 383
Target Start/End: Original strand, 11347 - 11722
Alignment:
| Q |
7 |
tattattctttaaggaaacatgaatgggtcaacaattccaatagttgaaggtgtagagaaattggggaacaatattgatgtgaatattgtgcaaaatgga |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11347 |
tattattttttaaggaaacatgaatgggtcaacaattccaatagttgaaggtgtagagaaattgaggaacaatattgatgtgaatattgtgcaaaatgga |
11446 |
T |
|
| Q |
107 |
gaagagagtgttgttgattatataccaaacttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggt |
206 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11447 |
gaagagactgttgttgattatataccacacttggaaatggagtttgaatctgaggcagtggcatatgaattttataataagtatagtaggagaattgggt |
11546 |
T |
|
| Q |
207 |
tcggtattcgtcgagaatatggaaataaaagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11547 |
tcggtattcgtcgagaatatggaaataaaagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaac-gggtgttgacaa |
11645 |
T |
|
| Q |
307 |
acgagaccatttgacaaaagaggggagagtggaaaccagaacgggatgtgatgcacgtatggttatttcacttgatc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11646 |
acgagaccatttgacaaaagaggggagagtggaaaccagaacgggatgtgatgcacgtatggttatttcacttgatc |
11722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 135 - 307
Target Start/End: Original strand, 6827440 - 6827612
Alignment:
| Q |
135 |
acttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataa |
234 |
Q |
| |
|
||||||||||| ||||||| |||||| | ||||| ||||||||||||||| |||| |||| |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
6827440 |
acttggaaatgaagtttgattctgagtcggcggcttatgaattttataatgagtacagtaaaagaattggatttggtattcgtcgagaatatggaaataa |
6827539 |
T |
|
| Q |
235 |
aagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaaa |
307 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
6827540 |
aagcaaagtagatggagttttgacttcaagaagattcacatgcttcaaagagggtgtacggggtgttgacaaa |
6827612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 129 - 380
Target Start/End: Complemental strand, 5358748 - 5358497
Alignment:
| Q |
129 |
taccaaacttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatgg |
228 |
Q |
| |
|
||||| |||| |||||||||||||| |||||||| ||||||||||||||||||| |||||||||||| | ||| || ||||| ||||||||||||| |
|
|
| T |
5358748 |
taccacacttagaaatggagtttgagtctgaggccttggcatatgaattttataatgagtatagtaggaaatgtggttttggtatccgtcgagaatatgc |
5358649 |
T |
|
| Q |
229 |
aaataaaagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaaacgagaccatttgacaaaagag |
328 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| ||| | ||||| |||||||||| | | |||| ||||||||| || | |||||||||||| |
|
|
| T |
5358648 |
aaataaaagcaaaaaagatggagttcttacttcaagaatatttatgtgctccaaagagggtagatgcggtggtgacaaacgtgattacttgacaaaagag |
5358549 |
T |
|
| Q |
329 |
gggagagtggaaaccagaacgggatgtgatgcacgtatggttatttcacttg |
380 |
Q |
| |
|
| ||| ||||| ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
5358548 |
gctcgagcagaaactagaacaggatgtttagcacgtatggttatttcacttg |
5358497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 135 - 307
Target Start/End: Complemental strand, 5960181 - 5960009
Alignment:
| Q |
135 |
acttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataa |
234 |
Q |
| |
|
||||||||||| ||||||| |||||| | ||||| ||||||||||||||| |||| |||| |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
5960181 |
acttggaaatgaagtttgattctgagtcggcggcttatgaattttataatgagtacagtaaaagaattggatttggtattcgtcgagaatatggaaataa |
5960082 |
T |
|
| Q |
235 |
aagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaaa |
307 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| |
|
|
| T |
5960081 |
aagcaaagtagatggagttttgacttcaagaagattcacatgcttcaaagagggtgtacgaggtgttgacaaa |
5960009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 135 - 289
Target Start/End: Original strand, 46165350 - 46165504
Alignment:
| Q |
135 |
acttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataa |
234 |
Q |
| |
|
|||||| |||| |||||||||||||||| | ||||||||||||||||||| | || |||| |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
46165350 |
acttgggaatgcagtttgaatctgaggcggtggcatatgaattttataatgattacagtaaaagaattggatttggtattcgtcgagaatatggaaataa |
46165449 |
T |
|
| Q |
235 |
aagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggt |
289 |
Q |
| |
|
||||| || ||||||| || ||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
46165450 |
aagcagaatagatggagttttgacttccagaagattcacatgcttcaaagagggt |
46165504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 135 - 307
Target Start/End: Original strand, 4127600 - 4127772
Alignment:
| Q |
135 |
acttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataa |
234 |
Q |
| |
|
||||||||||| | ||||| |||||||| ||||| ||||| ||||||||| |||| |||| | ||||| || |||||||||||||||||||||||||| |
|
|
| T |
4127600 |
acttggaaatgaattttgattctgaggcggcggcttatgatttttataatgagtacagtaaaataattgaatttggtattcgtcgagaatatggaaataa |
4127699 |
T |
|
| Q |
235 |
aagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaaa |
307 |
Q |
| |
|
||||| | ||||||| || ||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| |
|
|
| T |
4127700 |
aagcagagtagatggagttttgacttcaagaagattcacatgcttcaaagagggtgtacgaggtgttgacaaa |
4127772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 135 - 290
Target Start/End: Complemental strand, 46512459 - 46512304
Alignment:
| Q |
135 |
acttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataa |
234 |
Q |
| |
|
|||||| |||| |||||||||||||| | ||||||||||||||| ||||| | || |||| |||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
46512459 |
acttgggaatgaagtttgaatctgagacggcggcatatgaatttgataatgattacagtaaaagaattggatttggtattcgttgagaatatggaaataa |
46512360 |
T |
|
| Q |
235 |
aagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggta |
290 |
Q |
| |
|
||||| || ||||||| || ||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
46512359 |
aagcagaatagatggagttttgacttcgagaagattcacatgcttcaaagagggta |
46512304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 149 - 307
Target Start/End: Complemental strand, 28215115 - 28214957
Alignment:
| Q |
149 |
tttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataaaagcaaaaaagatg |
248 |
Q |
| |
|
|||||||| |||| ||| || ||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
28215115 |
tttgaatccgaggtagctgcttatgaattttataatgagtatagtaaaagaattggatttggtattcgtcgagaatatgggaataaaagcaaaaaagacg |
28215016 |
T |
|
| Q |
249 |
gaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaaa |
307 |
Q |
| |
|
| || | ||||||||||||||||| |||| ||||| |||| ||| ||||||||||| |
|
|
| T |
28215015 |
gggttttaacttcaagaagattcacatgctacaaagaaggtacacgaagtgttgacaaa |
28214957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 279
Target Start/End: Complemental strand, 26338724 - 26338651
Alignment:
| Q |
209 |
ggtattcgtcgagaatatggaaataaaagcaaaaaagatggaattctgacttca---agaagattcacgtgctt |
279 |
Q |
| |
|
||||||| ||||||||||||||||||||| | || ||||||| || |||||||| ||||||||||| ||||| |
|
|
| T |
26338724 |
ggtattcatcgagaatatggaaataaaagtagaatagatggagttttgacttcaaagagaagattcacatgctt |
26338651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 28214926 - 28214881
Alignment:
| Q |
338 |
gaaaccagaacgggatgtgatgcacgtatggttatttcacttgatc |
383 |
Q |
| |
|
||||| |||||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
28214926 |
gaaactagaacggggtgtaatgcacgtatgggtatttcacttgatc |
28214881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 135 - 307
Target Start/End: Original strand, 36383183 - 36383355
Alignment:
| Q |
135 |
acttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataa |
234 |
Q |
| |
|
||||||||||| ||||||| |||||| | ||||| ||||||||||||||| |||| |||| |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
36383183 |
acttggaaatgaagtttgattctgagtcggcggcttatgaattttataatgagtacagtaaaagaattggatttggtattcgtcgagaatatggaaataa |
36383282 |
T |
|
| Q |
235 |
aagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaaa |
307 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| |
|
|
| T |
36383283 |
aagcaaagtagatggagttttgacttcaagaagattcacatgcttcaaagagggtgtacgaggtgttgacaaa |
36383355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 135 - 307
Target Start/End: Original strand, 29760324 - 29760496
Alignment:
| Q |
135 |
acttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataa |
234 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||| ||||||||||||||| |||| |||| |||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
29760324 |
acttggaaatgaagtttgattctgaggcggcggcttatgaattttataatgagtacagtaaaagaattggatttggtattcatcgagaatatggaaataa |
29760423 |
T |
|
| Q |
235 |
aagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaaa |
307 |
Q |
| |
|
||||| | ||||||| || ||||||||||||||||||| ||||| ||||||||| ||| ||||||| |||| |
|
|
| T |
29760424 |
aagcatagtagatggagttttgacttcaagaagattcacatgcttcaaagagggtgtacgaggtgttggcaaa |
29760496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 135 - 307
Target Start/End: Complemental strand, 14522 - 14350
Alignment:
| Q |
135 |
acttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataa |
234 |
Q |
| |
|
||||||||||| | ||||| | |||||| ||||| ||||| ||||||||| ||||||||| | |||||| || |||||||||||||||||||||||||| |
|
|
| T |
14522 |
acttggaaatgaattttgattatgaggcggcggcttatgatttttataatgagtatagtaaaataattggatttggtattcgtcgagaatatggaaataa |
14423 |
T |
|
| Q |
235 |
aagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaaa |
307 |
Q |
| |
|
||||| | ||||||| || ||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| |
|
|
| T |
14422 |
aagcagagtagatggagttttgacttcaagaagattcacatgcttcaaagagggtgtacgaggtgttgacaaa |
14350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 135 - 289
Target Start/End: Complemental strand, 25488039 - 25487885
Alignment:
| Q |
135 |
acttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataa |
234 |
Q |
| |
|
|||||| |||| | |||||||||||||| | ||||||||||||||||||| | || |||| |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
25488039 |
acttgggaatgcattttgaatctgaggcggtggcatatgaattttataatgattacagtaaaagaattggatttggtattcgtcgagaatatggaaataa |
25487940 |
T |
|
| Q |
235 |
aagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggt |
289 |
Q |
| |
|
||||| || ||||||| || ||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
25487939 |
aagcagaatagatggagttttgacttcgagaagattcacatgcttcaaagagggt |
25487885 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 135 - 289
Target Start/End: Original strand, 48986934 - 48987088
Alignment:
| Q |
135 |
acttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataa |
234 |
Q |
| |
|
|||||| |||| | |||||||||||||| | ||||||||||||||||||| | || |||| |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
48986934 |
acttgggaatgcaatttgaatctgaggcggtggcatatgaattttataatgattacagtaaaagaattggatttggtattcgtcgagaatatggaaataa |
48987033 |
T |
|
| Q |
235 |
aagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggt |
289 |
Q |
| |
|
||||| || ||||||| || ||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
48987034 |
aagcagaatagatggagttttgacttcgagaagattcacatgcttcaaagagggt |
48987088 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 149 - 307
Target Start/End: Complemental strand, 8146509 - 8146351
Alignment:
| Q |
149 |
tttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataaaagcaaaaaagatg |
248 |
Q |
| |
|
|||||||| |||| ||| || ||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8146509 |
tttgaatccgaggtagctgcttatgaattttataatgagtatagtaaaagaattggatttggtattcgtcgagaatatgggaataaaagcaaaaaagatg |
8146410 |
T |
|
| Q |
249 |
gaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaaa |
307 |
Q |
| |
|
| || | ||||||||||||||||| |||| ||||| |||| ||| ||||||||||| |
|
|
| T |
8146409 |
gggttttaacttcaagaagattcacatgctacaaagaaggtacacgaagtgttgacaaa |
8146351 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 41134722 - 41134817
Alignment:
| Q |
211 |
tattcgtcgagaatatggaaataaaagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaa |
306 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||| |||||||| |||||| |||| ||||||||||| || ||||||||||| |
|
|
| T |
41134722 |
tattcgtcggaaatatggaaataaaagcaaaaaagatagaattccgacttcaataagatttgtatgctccaaagagggtaatcgaggtgttgacaa |
41134817 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 8146320 - 8146275
Alignment:
| Q |
338 |
gaaaccagaacgggatgtgatgcacgtatggttatttcacttgatc |
383 |
Q |
| |
|
||||| |||||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
8146320 |
gaaactagaacggggtgtaatgcacgtatgggtatttcacttgatc |
8146275 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 135 - 305
Target Start/End: Original strand, 17939421 - 17939591
Alignment:
| Q |
135 |
acttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataa |
234 |
Q |
| |
|
||||||||||| | ||||| |||||||| ||||| ||||| ||||||||| |||| |||| | |||||| || ||||||||||||||||||||||||| |
|
|
| T |
17939421 |
acttggaaatgaattttgattctgaggcggcggcttatgatttttataatgagtacagtaaaataattggatttggtattcgtcgagaatatggaaatag |
17939520 |
T |
|
| Q |
235 |
aagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgaca |
305 |
Q |
| |
|
||||| | ||||||| || ||||||||||||||||||| ||||| ||||||||| ||| |||||||||| |
|
|
| T |
17939521 |
aagcagagtagatggatttttgacttcaagaagattcacatgcttcaaagagggtgtacgaggtgttgaca |
17939591 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 149 - 307
Target Start/End: Original strand, 5419 - 5577
Alignment:
| Q |
149 |
tttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataaaagcaaaaaagatg |
248 |
Q |
| |
|
|||||||| |||| ||| || ||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
5419 |
tttgaatccgaggtagctgcttatgaattttataatgagtatagtaaaagaattggatttggtattcgtcgagaatatgggaataaaagcaaaaaagacg |
5518 |
T |
|
| Q |
249 |
gaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaaa |
307 |
Q |
| |
|
| || | ||||||||||||||||| |||| ||||| |||| ||| ||||||||||| |
|
|
| T |
5519 |
gggttttaacttcaagaagattcacatgctacaaagaaggtacacgaagtgttgacaaa |
5577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 5608 - 5653
Alignment:
| Q |
338 |
gaaaccagaacgggatgtgatgcacgtatggttatttcacttgatc |
383 |
Q |
| |
|
||||| |||||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
5608 |
gaaactagaacggggtgtaatgcacgtatgggtatttcacttgatc |
5653 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 135 - 273
Target Start/End: Complemental strand, 18800 - 18662
Alignment:
| Q |
135 |
acttggaaatggagtttgaatctgaggcagcggcatatgaattttataataagtatagtaggagaattgggttcggtattcgtcgagaatatggaaataa |
234 |
Q |
| |
|
||||||||||| ||||||| |||||||| | ||| ||||||||||||||| |||| |||| | |||||| || ||||||||| ||||||| ||||||| |
|
|
| T |
18800 |
acttggaaatgaagtttgattctgaggcggtggcttatgaattttataatgagtacagtaaaataattggatttggtattcgtttagaatatagaaataa |
18701 |
T |
|
| Q |
235 |
aagcaaaaaagatggaattctgacttcaagaagattcac |
273 |
Q |
| |
|
||||| | ||||||| || |||||||| |||||||||| |
|
|
| T |
18700 |
aagcagagtagatggatttttgacttcaggaagattcac |
18662 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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