View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3856_low_34 (Length: 355)
Name: NF3856_low_34
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 48068897 - 48068572
Alignment:
| Q |
20 |
attgacgtgacataaaactagtatattattaatccaattggatgatttcacatcaacgtgttttaagtcacaaacttgtcttgaaataaagcagtgtgtc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48068897 |
attgacgtgacataaaactagtatattattaatccaattggatgatttcacatcaatgtgttttaagtcacaaacttgtcttgaaataaaccagtgtgtc |
48068798 |
T |
|
| Q |
120 |
ccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacagtgtttgagcatggaacaatca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48068797 |
ccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacggtgtttgagcatggaacaatca |
48068698 |
T |
|
| Q |
220 |
aggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48068697 |
aggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaat |
48068598 |
T |
|
| Q |
320 |
gatatatattttttctggtaacctat |
345 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
48068597 |
gatatatattttttctggtaacctat |
48068572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 99 - 341
Target Start/End: Complemental strand, 48064162 - 48063920
Alignment:
| Q |
99 |
cttgaaataaagcagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacag |
198 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| || |
|
|
| T |
48064162 |
cttgaaataaagcagtgtgtgacagaacctaagagggcacaatatggaggaggcattatagtaaatccaggatttgatcacaacataaagggttggagag |
48064063 |
T |
|
| Q |
199 |
tgtttgagcatggaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaa |
298 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||||||||||| ||||| ||| ||||||| |||||||||| |||| |||| ||| |||| ||||| || |
|
|
| T |
48064062 |
tgtttggaaatggaacaatcgaggaacgaatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaa |
48063963 |
T |
|
| Q |
299 |
agtccaactggagaaagaaatgatatatattttttctggtaac |
341 |
Q |
| |
|
||||||||| |||||| ||||||||| || |||||||||||| |
|
|
| T |
48063962 |
ggtccaactgaagaaaggaatgatatacatgttttctggtaac |
48063920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 107 - 345
Target Start/End: Complemental strand, 48101407 - 48101169
Alignment:
| Q |
107 |
aaagcagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacagtgtttgag |
206 |
Q |
| |
|
|||||||||||| |||||||| |||| ||||||||||| || ||||||| ||||||||||||||||||||||||||| || | |||| |||||||| |
|
|
| T |
48101407 |
aaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttgga |
48101308 |
T |
|
| Q |
207 |
catggaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaac |
306 |
Q |
| |
|
||||||||||| |||||||| |||||| | ||||||| ||| ||||||| ||||||||||||||||||||| |||||||| ||||| || ||||||| |
|
|
| T |
48101307 |
aatggaacaatcgaggaacgagtatcaaacaacggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaac |
48101208 |
T |
|
| Q |
307 |
tggagaaagaaatgatatatattttttctggtaacctat |
345 |
Q |
| |
|
|| |||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
48101207 |
tgaagaaaggaatgatatatactttttctggtaacctat |
48101169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 122 - 341
Target Start/End: Complemental strand, 48107808 - 48107589
Alignment:
| Q |
122 |
agaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacagtgtttgagcatggaacaatcaag |
221 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||||||||| | ||||||||||||||||| ||| ||||||||| |||| |||||||||| || |
|
|
| T |
48107808 |
agaacctcaaagagcacaatatggagggggaattatagtaaattccggatttgatcacaacatagagggttggacagtatttggaaatggaacaattgag |
48107709 |
T |
|
| Q |
222 |
gaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatga |
321 |
Q |
| |
|
||||| | ||||||||||||||||| ||| ||||||| |||||| ||||||||| ||||||||||||| ||||||| || || || ||||||| | ||| |
|
|
| T |
48107708 |
gaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatagtttttcacaaacggttcagctagagaaaggattga |
48107609 |
T |
|
| Q |
322 |
tatatattttttctggtaac |
341 |
Q |
| |
|
|||||| |||||| |||||| |
|
|
| T |
48107608 |
tatatactttttcaggtaac |
48107589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University