View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_37 (Length: 339)
Name: NF3856_low_37
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 49213464 - 49213156
Alignment:
| Q |
11 |
caaaggacataaaaagatagaatataaagagtttcagtacaataccaaaaaaggaaaatactacttatcgcgaaaacaagcctcacgaaattgtacacaa |
110 |
Q |
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| T |
49213464 |
caaaggacataaaaagatagaatgtaaagagtttcagtacaataccaaaaaaggaaaatactacttatcgcgaaaacaagcctcacgaaattgtacacaa |
49213365 |
T |
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| Q |
111 |
catgtgattggttgtttcctatcactcattcctccaatgtatccgacaaatacagaactaacatttccaccacaaaaagtatcacattgatatttgtgaa |
210 |
Q |
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| T |
49213364 |
catgtgattggttgtttcctatcactcattcctccaatgtatccgacaaatacagaactaaaatttccaccacaaaaagtatcacattgatatttgtgaa |
49213265 |
T |
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| Q |
211 |
tttcgtgatggaaatgctttgtactaaatagcatttttgcccaaaaattacaattaagtatttttgatgctgcaaatgctgcttcaagaagatattgtac |
310 |
Q |
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| T |
49213264 |
tttcgtgatggaaatgctttgtactaaatagcatttttgcccaaaaattacaattaagtatttttgatgctgcaaatgctgcttcaagaagatattgtac |
49213165 |
T |
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| Q |
311 |
catttcttt |
319 |
Q |
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||||||||| |
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| T |
49213164 |
catttcttt |
49213156 |
T |
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