View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_4 (Length: 748)
Name: NF3856_low_4
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 20 - 570
Target Start/End: Complemental strand, 48080738 - 48080188
Alignment:
| Q |
20 |
ttcccatcttagagttttgtttgatctctaacaaatgtcccaacaaaaattcaaaacaaggttgaaacatcaattgtgtacaatgaacactcaaacactc |
119 |
Q |
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| T |
48080738 |
ttcccatcttagagttttgtttgatctctaaaaaatgtcccaacaaaaattcaaaacaaggttgaaacatcaattgtgtacaatgaacactcaaacactc |
48080639 |
T |
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| Q |
120 |
aaagtttataaacattcaagaacttctattttcaatcataattttgagtttgtatgattcatgaaatgtatttttaaagacaaatatcatgatgtcaatg |
219 |
Q |
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| T |
48080638 |
aaagtttataaacaatcaagaacttctattttcaatcataattttgagtttgtatgattcatgaaatgtatttttaaagacaaatatcatgatgtcaatg |
48080539 |
T |
|
| Q |
220 |
aatcaaagcaatgcttataaaacaatttgctaaaccaaagtgtgatgtcaaacattccaatcaatagttgattattcacaatcacaatcctcacaaatgt |
319 |
Q |
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| T |
48080538 |
aatcaaagcaatgcttataaaacaatttgctaaaccaaagtgtgatgtcaaacattccaaccaatagttgattattcacaatcacaatcctcacaaatgt |
48080439 |
T |
|
| Q |
320 |
tgcacccaacgtgtaccttgtattcacaacaaatcaattttaaaaataaactaagcaattatcacaaaacatgcaatcaatcatggatcactaatatatt |
419 |
Q |
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| T |
48080438 |
tgcactcaacgtgtaccttgtattcacaacaaatcaattttaaaaataaactaagcaattatcacaaaacatgcaatcaatcatggatcactaatatatt |
48080339 |
T |
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| Q |
420 |
tccttgggttgtaatatgttagtcttcacaaaatcctttgtttttctaagaacgcaaaaagcctgaaaggttaaaagaacattttttcaatatacactac |
519 |
Q |
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| T |
48080338 |
tccttgggttgtaatatgttagtcttcacaaaatcctttgtttttctaagaacgcaaaaagcctaaaaggttaaaagaacattttttcaatatacactac |
48080239 |
T |
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| Q |
520 |
atatcctgaccacactttctttccttttccacactcaacaccatttggtaa |
570 |
Q |
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| T |
48080238 |
atatcctgaccacactttctttccttttccactctcaacaccatttggtaa |
48080188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 27906435 - 27906365
Alignment:
| Q |
246 |
ttgctaaaccaaagtgtgatgtcaaacattccaatcaatagttgattattcacaatcacaatcctcacaaa |
316 |
Q |
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| T |
27906435 |
ttgctaaatcaaagtgtgatgtcaaacatttcaatcaaaagtcaattattcataatcacaatgctcacaaa |
27906365 |
T |
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