View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3856_low_40 (Length: 320)

Name: NF3856_low_40
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3856_low_40
NF3856_low_40
[»] chr7 (16 HSPs)
chr7 (1-320)||(24863310-24863629)
chr7 (1-311)||(24834485-24834783)
chr7 (170-311)||(24899820-24899961)
chr7 (188-311)||(24754912-24755035)
chr7 (214-308)||(24697227-24697321)
chr7 (189-310)||(24807195-24807316)
chr7 (214-305)||(24537368-24537459)
chr7 (188-311)||(24842954-24843077)
chr7 (189-311)||(24854905-24855027)
chr7 (214-311)||(24896170-24896267)
chr7 (1-104)||(24754716-24754819)
chr7 (189-308)||(24826931-24827050)
chr7 (220-308)||(24727131-24727219)
chr7 (189-239)||(24716035-24716085)
chr7 (1-62)||(24843197-24843258)
chr7 (31-104)||(24900039-24900112)
[»] chr8 (2 HSPs)
chr8 (185-311)||(38612672-38612798)
chr8 (29-136)||(38612534-38612641)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 24863310 - 24863629
Alignment:
Q  1 ctctttcaacttctcattactcatattagtatgatccacaatgatgttcttttccttaagaaaatttagatcagccgaacaacaaatcaatccattgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24863310 ctctttcaacttctcattactcatattagtatgatccacaatgatgttcttttccttaagaaaatttagatcagccgaacaacaaatcaatccattgaaa 24863409  T
Q  101 atcagcgctgacaaagtaaatttgccgttgggactattcaggccatggtcctctattgcaacggaaatggaagaacttttccccttctttttatgatgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24863410 atcagcgctgacaaagtaaatttgccgttgggactattcaggccatggtcctctattgcaacggaaatggaagaacttttccccttctttttatgatgct 24863509  T
Q  201 cccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaaatgaaagtccaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24863510 cccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattgtcaaacttaaaatgaaagtccaa 24863609  T
Q  301 acctttcacttggcttactg 320  Q
    ||||||||||||||||||||    
T  24863610 acctttcacttggcttactg 24863629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 24834485 - 24834783
Alignment:
Q  1 ctctttcaacttctcattactcatattagtatgatccacaatgatgttcttttccttaagaaaatttagatcagccgaacaacaaatcaatccattgaaa 100  Q
    |||||||||||   |||||||||| || ||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |||||||| || |||| ||||    
T  24834485 ctctttcaactcaccattactcatcttcgtatgatccacaatgattttcttttccttcagaaaaattacatcagccgagcaacaaattaacccatggaaa 24834584  T
Q  101 atcagcgctgacaaagtaaatttgccgttgggactattcaggccatggtcctctattgcaacggaaatggaagaacttttccccttctttttatgatgct 200  Q
    |||| ||| ||| |||||||||||||| |||||||| | ||||  |||       |||      ||   |||||||||||||| ||||||||||||||||    
T  24834585 atcaacgcagacgaagtaaatttgccgatgggactagtgaggctctggg------ttg------aagacgaagaacttttcccattctttttatgatgct 24834672  T
Q  201 cccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaaatgaaagtccaa 300  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||||||||  ||   ||||||||||  ||||||||    
T  24834673 cccaaacaatgacattgcgccactttgctttcgttgtttctgtgatatgcaactgtgcaatttcgagtttccccattctgaacttaaaattgaagtccaa 24834772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 170 - 311
Target Start/End: Complemental strand, 24899961 - 24899820
Alignment:
Q  170 gaagaacttttccccttctttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtt 269  Q
    |||||||| ||||  ||||||||||||||||||||  |||| ||||||| |||||||||||| || |||| ||| |||||||| ||| ||||||  | ||    
T  24899961 gaagaactcttccaattctttttatgatgctcccaagcaattacattgcaccactttgctttcgtagtttttgtaatatgcaattgtgcaatttcaaatt 24899862  T
Q  270 tcccattttcaaacttaaaatgaaagtccaaacctttcactt 311  Q
    ||||||| ||||||||||| |  || ||||||||| ||||||    
T  24899861 tcccattctcaaacttaaactcgaaatccaaacctctcactt 24899820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 188 - 311
Target Start/End: Original strand, 24754912 - 24755035
Alignment:
Q  188 tttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaa 287  Q
    |||||||||||||||||  |||||||||||| |||||| ||||||||||||| ||| || |  |||||| |||||| |||| |||| |||||||| ||||    
T  24754912 tttttatgatgctcccaagcaatgacattgcaccacttagcttttgttgtttttgttatctctaactgtgcaatttccagtgtccccttttcaaagttaa 24755011  T
Q  288 aatgaaagtccaaacctttcactt 311  Q
    | | |||||||| |||||| ||||    
T  24755012 agtaaaagtccatacctttaactt 24755035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 24697227 - 24697321
Alignment:
Q  214 attgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaaatgaaagtccaaacctttca 308  Q
    ||||| |||||| |||||||||||||  ||||||||||| ||||||||||  |||||||| |||||||||||||| ||||||| ||||| |||||    
T  24697227 attgcaccacttggcttttgttgttttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaagtgaaagttcaaacatttca 24697321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 310
Target Start/End: Original strand, 24807195 - 24807316
Alignment:
Q  189 ttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaa 288  Q
    ||||||||||||||||  |||| | ||||||||||||||| || ||||||| |||||||||||   || ||||||  |||||||| ||||||||||||||    
T  24807195 ttttatgatgctcccaagcaatcatattgcgccactttgccttcgttgtttttgtgatatgcagtggtgcaatttgaagtttcccgttttcaaacttaaa 24807294  T
Q  289 atgaaagtccaaacctttcact 310  Q
     | ||||| ||||||| |||||    
T  24807295 ctcaaagttcaaacctctcact 24807316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 24537459 - 24537368
Alignment:
Q  214 attgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaaatgaaagtccaaacctt 305  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||||||||  |||| ||| ||||||||||| || | |||||||| |||||    
T  24537459 attgcaccacttagcttttgttgtttttgtgatatgcaactgttcaatttcaagttcccccttttcaaacttgaatttaaagtccatacctt 24537368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 311
Target Start/End: Complemental strand, 24843077 - 24842954
Alignment:
Q  188 tttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaa 287  Q
    ||||||||||||||| |  |||||| |||| ||||||||||||| |||||||  |||||||| |||||| |||||| ||||||||| ||||  |||| ||    
T  24843077 tttttatgatgctccaaagcaatgaaattgagccactttgctttcgttgttttagtgatatgtaactgtgcaatttccagtttcccctttttgaactcaa 24842978  T
Q  288 aatgaaagtccaaacctttcactt 311  Q
    | | ||| ||||||||||| ||||    
T  24842977 agtaaaattccaaacctttaactt 24842954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 311
Target Start/End: Original strand, 24854905 - 24855027
Alignment:
Q  189 ttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaa 288  Q
    |||||||||| |||||  |||| | ||||| ||||||  ||||| |||||| |||||||||||  ||||||||||  |||| |||||||| |||||||||    
T  24854905 ttttatgatgttcccaagcaattatattgcaccacttatctttttttgtttttgtgatatgcagttgttcaatttcaagttccccattttgaaacttaaa 24855004  T
Q  289 atgaaagtccaaacctttcactt 311  Q
     | ||| ||||| ||||||||||    
T  24855005 gtaaaaatccaatcctttcactt 24855027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 24896170 - 24896267
Alignment:
Q  214 attgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaaatgaaagtccaaacctttcactt 311  Q
    ||||| |||||| ||||||||||||| | |||||||||  ||||||||||  |||| |||||||| ||||||||| | ||| ||||| ||||||||||    
T  24896170 attgcaccacttagcttttgttgtttttatgatatgcagttgttcaatttcaagttccccattttgaaacttaaagtaaaaatccaatcctttcactt 24896267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 24754716 - 24754819
Alignment:
Q  1 ctctttcaacttctcattactcatattagtatgatccacaatgatgttcttttccttaagaaaatttagatcagccgaacaacaaatcaatccattgaaa 100  Q
    ||||| ||||| |||||||||||| ||   ||||||||||||||| ||||| ||||||||||  || | |||||| | |||||||||||| |||| ||||    
T  24754716 ctcttccaactcctcattactcatcttcaaatgatccacaatgatattcttgtccttaagaagcttcacatcagcagcacaacaaatcaacccatcgaaa 24754815  T
Q  101 atca 104  Q
    ||||    
T  24754816 atca 24754819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 308
Target Start/End: Original strand, 24826931 - 24827050
Alignment:
Q  189 ttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaa 288  Q
    ||||||||||||||||  |||| | ||| | |||||| |||||||| |||| |||||||||||  |||| |||||  ||  || | ||||||||||||||    
T  24826931 ttttatgatgctcccaagcaataagattacaccacttggcttttgtcgtttttgtgatatgcagttgtttaatttcaagagtctccttttcaaacttaaa 24827030  T
Q  289 atgaaagtccaaacctttca 308  Q
     | |||||||||||||||||    
T  24827031 gtaaaagtccaaacctttca 24827050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 24727131 - 24727219
Alignment:
Q  220 ccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaaatgaaagtccaaacctttca 308  Q
    |||||| | ||||||||| | ||||||||| | |||||||||||  ||||| || |||| ||||||||| | |||||||||||||||||    
T  24727131 ccacttggattttgttgtgtttgtgatatgtagctgttcaatttcaagtttgccctttttaaacttaaagtaaaagtccaaacctttca 24727219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 24716035 - 24716085
Alignment:
Q  189 ttttatgatgctcccatacaatgacattgcgccactttgcttttgttgttt 239  Q
    |||||||||| ||||| | ||| |||||||||||||||||||| |||||||    
T  24716035 ttttatgatgttcccaaaaaattacattgcgccactttgctttcgttgttt 24716085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 24843258 - 24843197
Alignment:
Q  1 ctctttcaacttctcattactcatattagtatgatccacaatgatgttcttttccttaagaa 62  Q
    ||||||||||| |||||||||||| ||   |||||||||||| || ||||| ||||||||||    
T  24843258 ctctttcaactcctcattactcatcttcaaatgatccacaataatattcttctccttaagaa 24843197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 24900112 - 24900039
Alignment:
Q  31 atgatccacaatgatgttcttttccttaagaaaatttagatcagccgaacaacaaatcaatccattgaaaatca 104  Q
    |||||| |||||||| ||||||||||| ||||  || | ||||||   |||||||||||| |||||||||||||    
T  24900112 atgatctacaatgatattcttttccttgagaagcttcacatcagcttcacaacaaatcaaaccattgaaaatca 24900039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 185 - 311
Target Start/End: Original strand, 38612672 - 38612798
Alignment:
Q  185 ttctttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaact 284  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||  ||||||||  ||   ||||    
T  38612672 ttctttttatgatgctcccaaacaatgacattgcgccaatttgctttcgttgtttctgtgatatgcaactgtgcaatttcgagtttccccattctgaact 38612771  T
Q  285 taaaatgaaagtccaaacctttcactt 311  Q
    ||||||  || ||||||||||||||||    
T  38612772 taaaattgaattccaaacctttcactt 38612798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 38612534 - 38612641
Alignment:
Q  29 gtatgatccacaatgatgttcttttccttaagaaaatttagatcagccgaacaacaaatcaatccattgaaaatcagcgctgacaaagtaaatttgccgt 128  Q
    ||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |||||||| || |||| |||||||| ||| ||| ||||||||||||||     
T  38612534 gtatgatccacaatgattttcttttccttcagaaaaattacatcagccgagcaacaaattaacccatggaaaatcaacgcagacgaagtaaatttgccga 38612633  T
Q  129 tgggacta 136  Q
    ||||||||    
T  38612634 tgggacta 38612641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University